Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
☆44Mar 26, 2024Updated 2 years ago
Alternatives and similar repositories for melonnpan
Users that are interested in melonnpan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Dec 15, 2020Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jan 15, 2026Updated 2 months ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆24Feb 4, 2026Updated 2 months ago
- Model-based Integration of Metabolite Observations and Species Abundances☆24Feb 21, 2020Updated 6 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆164Feb 13, 2026Updated 2 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 7 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆14Sep 1, 2025Updated 7 months ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated 2 months ago
- ☆78Oct 16, 2024Updated last year
- Code used in MiCE 8992 Spring 2016☆44Apr 19, 2016Updated 9 years ago
- Rapid and scalable correlation estimation for compositional data☆97May 12, 2024Updated last year
- ☆14Feb 4, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Oct 3, 2023Updated 2 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Taxa Insertion by Parsimony☆15Jan 22, 2025Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- ☆12Jul 30, 2018Updated 7 years ago
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆60Dec 21, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ley Lab MetaGenome Profiler DataBase generator☆49Nov 9, 2022Updated 3 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 6 months ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- R implementation of the LEfSe method☆65Updated this week
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Python package to study microbial communities using metabolic modeling.☆124Mar 31, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆228Apr 1, 2026Updated last week
- Development version of the biom package for R☆24Apr 13, 2021Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Aug 24, 2022Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆22Jul 6, 2023Updated 2 years ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 8 years ago
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆24Oct 3, 2025Updated 6 months ago