biobakery / melonnpanLinks
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
☆37Updated last year
Alternatives and similar repositories for melonnpan
Users that are interested in melonnpan are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- gutSMASH☆55Updated 6 months ago
- ☆41Updated 7 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- A microbiome analysis toolkit for R☆23Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- R shiny app for interactive microbiome analysis☆55Updated last month
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆23Updated 5 years ago
- ☆13Updated 7 months ago
- Tools for visualising microbial community amplicon data☆67Updated 3 months ago
- ☆23Updated 7 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- selbal: selection of balances for microbial signatures☆31Updated 4 months ago
- R implementation of the LEfSe method☆59Updated 2 months ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago