leylabmpi / SynTrackerLinks
SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.
☆39Updated 4 months ago
Alternatives and similar repositories for SynTracker
Users that are interested in SynTracker are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆58Updated 3 months ago
- Bacterial GWAS analysis☆46Updated last week
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Gene-flank analysis tool☆34Updated last year
- Calculate assocations between genes and traits☆29Updated 10 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Extract metadata from biosamples in NCBI☆17Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 8 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year