Development version of the biom package for R
☆24Apr 13, 2021Updated 5 years ago
Alternatives and similar repositories for biom
Users that are interested in biom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Biological Observation Matrix (BIOM) Format Project☆98Jun 1, 2026Updated last month
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 9 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- ☆12Jun 12, 2019Updated 7 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Jul 3, 2018Updated 8 years ago
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated 8 months ago
- Python bindings for WDL☆10Nov 9, 2017Updated 8 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆32Sep 12, 2023Updated 2 years ago
- Smart search engine for all bioinformatics databases worldwide☆28Dec 16, 2017Updated 8 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆61Dec 21, 2022Updated 3 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- SHallow shOtGUN profiler☆52Mar 4, 2022Updated 4 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- rOpenSci .github files☆10Jul 29, 2019Updated 6 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 7 months ago
- A microbial profiling framework for metagenomic analysis☆24Apr 9, 2020Updated 6 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11May 10, 2025Updated last year
- A cross-platform (mobile and desktop) digital catalog app for natural history collections☆15Updated this week
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆44Mar 26, 2024Updated 2 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- ☆14Sep 18, 2018Updated 7 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 10 months ago
- A series of templates for a Quarto project to convert a single Markdown input into beautiful and simple Word, HTML, and PDF worksheets.☆14Feb 12, 2022Updated 4 years ago
- Workflows I find helpful for fungal genome annotation☆22Jun 30, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sample code for triggering Globus Flows using the Python watchdog library.☆20Jul 13, 2026Updated 2 weeks ago
- Biology 202 Course Website☆18Oct 1, 2020Updated 5 years ago
- a collection of R functions for data manipulation, data analysis, and plotting☆14Oct 29, 2020Updated 5 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- This is the GitHub repository dedicated to the development of the R package IsoriX☆15Jan 13, 2026Updated 6 months ago
- Batch Connect - OSC Code Server☆21Jul 22, 2026Updated last week
- [DEPRECATED] Active at https://github.com/ropensci/roweb2☆17Oct 26, 2017Updated 8 years ago