joey711 / biomLinks
Development version of the biom package for R
☆24Updated 4 years ago
Alternatives and similar repositories for biom
Users that are interested in biom are comparing it to the libraries listed below
Sorting:
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 weeks ago
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- ☆35Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Updated last year
- Talk to the NCBI EUtils☆22Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Validate FastQ Files☆36Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- Tools for visualising microbial community amplicon data☆69Updated last month
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last month
- Visualization tool for genetic reassortment☆21Updated 5 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- Tool to easily install QIIME's dependencies on Linux systems☆33Updated 9 years ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Updated 6 years ago
- Fast and accurate sequence demultiplexing☆28Updated 3 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18Updated 11 years ago