robinschmid / microbe_masst
Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
☆18Updated 3 weeks ago
Alternatives and similar repositories for microbe_masst:
Users that are interested in microbe_masst are comparing it to the libraries listed below
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆25Updated last month
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated last year
- ☆12Updated 3 weeks ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated 2 months ago
- ☆28Updated 6 months ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆35Updated this week
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆19Updated 3 weeks ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆26Updated last year
- ☆11Updated 2 months ago
- Comprehensive Python client for the Uniprot REST API☆45Updated 6 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 9 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆45Updated last year
- ☆61Updated 4 months ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Updated last year
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆18Updated 2 weeks ago
- ☆56Updated 9 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆35Updated this week
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆31Updated 4 months ago
- Differential Expression Analysis tool box R lang package for omics data☆42Updated last week
- A Comet-based, best practices proteomics pipeline.☆35Updated 11 months ago
- asari, metabolomics data preprocessing☆44Updated this week
- TimsR: Easy access to timsTOF Pro data from R.☆9Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆38Updated 11 months ago
- ☆13Updated last year
- MS2Query - machine learning assisted library querying of MS/MS spectra☆44Updated 5 months ago
- ☆16Updated this week
- pathway and network analysis for metabolomics☆40Updated 8 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆82Updated last year
- UniProt Id Mapping through API☆31Updated 4 months ago