robinschmid / microbe_masstLinks
Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
☆21Updated last week
Alternatives and similar repositories for microbe_masst
Users that are interested in microbe_masst are comparing it to the libraries listed below
Sorting:
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated 11 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Updated 2 years ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆50Updated 2 years ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆41Updated 5 months ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆53Updated last month
- asari, metabolomics data preprocessing☆55Updated this week
- Metabolome Annotation Workflow☆26Updated last month
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Updated 6 months ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28Updated 2 years ago
- ☆36Updated 4 months ago
- pathway and network analysis for metabolomics☆43Updated last week
- Molecular formula discovery via bottom-up MS/MS interrogation☆14Updated last year
- ☆55Updated 4 years ago
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Public Workflows at GNPS☆64Updated last year
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆94Updated last year
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year
- Comprehensive Python client for the Uniprot REST API☆53Updated 2 months ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆32Updated last month
- ☆66Updated last year
- ☆14Updated 2 weeks ago
- ☆15Updated 3 years ago
- 5-day workshop on Metabolomics and Data Analysis☆18Updated 6 years ago
- Multi-class signal peptide prediction and structure decoding model.☆98Updated 10 months ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆21Updated 2 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- DeepECtransformer☆29Updated 2 years ago
- ☆30Updated last year
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆26Updated last month