alexmsalmeida / metamapLinks
Snakemake workflow to map and quantify microbial genomes in metagenomic reads
☆12Updated last year
Alternatives and similar repositories for metamap
Users that are interested in metamap are comparing it to the libraries listed below
Sorting:
- ☆53Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆26Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Prophage Activity Estimator☆28Updated last year
- ☆20Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆15Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- ☆13Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- ☆18Updated 3 years ago
- ☆20Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- KEGG Module Evaluation Tool☆31Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Updated 3 years ago
- ☆13Updated 8 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Population genomics from metagenomes☆12Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- ☆24Updated 6 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated last week
- http://huttenhower.sph.harvard.edu/waafle☆20Updated 9 months ago