Alternatives and similar repositories for metamap

Users that are interested in metamap are comparing it to the libraries listed below

• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• allind / EukDetect
  ☆53Updated last month
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• EnvGen / POGENOM
  Population genomics from metagenomes
  ☆12Updated 11 months ago
• mgabriell1 / EUKsemble
  Pipeline for identification of eukaryotic contigs in metagenomic assemblies
  ☆13Updated last year
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆51Updated last year
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆14Updated this week
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆37Updated 3 years ago
• wandreopoulos / deeplasmid
  ☆20Updated 11 months ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆34Updated 2 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆30Updated 10 months ago
• patrickwest / EukRep_Pipeline
  ☆25Updated 6 years ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• wbazant / CORRAL
  ☆13Updated last year
• putonti / virMine
  ☆18Updated 3 years ago
• valflanza / accnet
  ☆13Updated 7 years ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆21Updated 2 years ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆27Updated 5 months ago
• Wanli-HE / Plaspline
  ☆19Updated 2 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated last month
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆50Updated last year
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆29Updated 3 months ago
• lauriebelch / SOCfinder
  ☆16Updated 3 months ago
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆24Updated this week
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆16Updated 4 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆30Updated last year
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 3 years ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆62Updated this week
• ZhenyanZhang / ARG-global
  Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…
  ☆19Updated 3 years ago