Snakemake workflow to map and quantify microbial genomes in metagenomic reads
☆14Oct 10, 2025Updated last year
Alternatives and similar repositories for metamap
Users that are interested in metamap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆60Sep 3, 2026Updated last month
- Analysing Metagenomic Species (MGS)☆41Nov 12, 2020Updated 5 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Set of utilities on sequences and BAM files☆28Oct 27, 2021Updated 4 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- ☆15Mar 14, 2023Updated 3 years ago
- R package to predict microbial loads☆21Updated this week
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- ☆18Feb 3, 2023Updated 3 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MicrobiomeReview☆11Jun 6, 2023Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆27Jan 20, 2025Updated last year
- MacSyFinder models allowing for a systematic search of anti-phage systems☆26May 14, 2026Updated 5 months ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆24Aug 24, 2026Updated last month
- ☆65Oct 2, 2026Updated 2 weeks ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 5 years ago
- ☆26Feb 7, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 5 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 11 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 8 months ago
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 3 years ago
- Snakemake pipeline for amplicon sequencing using dada2☆10Jul 17, 2023Updated 3 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Detection of NCLDV signatures in 'omic data☆35Dec 28, 2025Updated 9 months ago
- Functions to manipulate and visualize microbial community data☆14May 29, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
- ☆15Jun 26, 2025Updated last year
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- Bioinformatics program inStrain☆192Oct 9, 2026Updated last week
- ☆13Jul 4, 2023Updated 3 years ago
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 3 years ago