Alternatives and similar repositories for metamap

Users that are interested in metamap are comparing it to the libraries listed below

• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• allind / EukDetect
  ☆54Updated 3 months ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆28Updated last year
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆21Updated 2 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆32Updated last year
• EnvGen / POGENOM
  Population genomics from metagenomes
  ☆12Updated last year
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆15Updated last month
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆34Updated 2 years ago
• wandreopoulos / deeplasmid
  ☆20Updated last year
• wbazant / CORRAL
  ☆14Updated 2 years ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆27Updated 7 months ago
• Wanli-HE / Plaspline
  ☆20Updated 2 years ago
• mgabriell1 / EUKsemble
  Pipeline for identification of eukaryotic contigs in metagenomic assemblies
  ☆13Updated last year
• patrickwest / EukRep_Pipeline
  ☆24Updated 6 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 5 months ago
• putonti / virMine
  ☆18Updated 3 years ago
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆25Updated last week
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆45Updated this week
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆38Updated 3 years ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• lauriebelch / SOCfinder
  ☆16Updated 5 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 3 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆43Updated 2 years ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆64Updated this week
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆22Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆31Updated last month
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 3 years ago