alexmsalmeida / metamapLinks
Snakemake workflow to map and quantify microbial genomes in metagenomic reads
☆12Updated last year
Alternatives and similar repositories for metamap
Users that are interested in metamap are comparing it to the libraries listed below
Sorting:
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 2 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- Prediction of microbial interactions in complex communities☆12Updated 11 months ago
- MAG Circularization Method☆33Updated 3 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆30Updated 3 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆19Updated 3 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 4 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Updated 7 months ago
- ☆17Updated 5 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Quickly get the taxonomy of a genome☆10Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆22Updated 2 months ago
- Identifying misassemblies via deep learning☆12Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆29Updated 8 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- scripts for microbiome analysis☆11Updated 11 months ago