alexmsalmeida / metamapLinks
Snakemake workflow to map and quantify microbial genomes in metagenomic reads
☆12Updated last year
Alternatives and similar repositories for metamap
Users that are interested in metamap are comparing it to the libraries listed below
Sorting:
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- ☆16Updated 4 years ago
- Prophage Activity Estimator☆26Updated last year
- Prediction of microbial interactions in complex communities☆12Updated 9 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆20Updated 2 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- ☆25Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- KEGG Module Evaluation Tool☆29Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- ☆45Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆18Updated 3 years ago
- scripts for microbiome analysis☆11Updated 10 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- Metagenomic Estimation of Dietary Intake and Content.☆30Updated last month