alexmsalmeida / metamapView external linksLinks
Snakemake workflow to map and quantify microbial genomes in metagenomic reads
☆13Oct 10, 2025Updated 4 months ago
Alternatives and similar repositories for metamap
Users that are interested in metamap are comparing it to the libraries listed below
Sorting:
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated last year
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆58Jan 30, 2024Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- ☆57Updated this week
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆24Feb 7, 2025Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Mar 19, 2023Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- MAG Circularization Method☆32Nov 4, 2025Updated 3 months ago
- Detection of NCLDV signatures in 'omic data☆35Dec 28, 2025Updated last month
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆79Nov 23, 2023Updated 2 years ago
- MicrobiomeReview☆11Jun 6, 2023Updated 2 years ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆17Feb 2, 2026Updated 2 weeks ago
- ☆12Feb 26, 2019Updated 6 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 3 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning