MPBA / r-sparccLinks
R package computes correlation for relative abundances
☆13Updated 8 years ago
Alternatives and similar repositories for r-sparcc
Users that are interested in r-sparcc are comparing it to the libraries listed below
Sorting:
- R implementation of the LEfSe method☆59Updated this week
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated last month
- Tools for visualising microbial community amplicon data☆69Updated last week
- ☆41Updated 7 years ago
- Transform files to the microtable object with microeco package☆28Updated 2 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- R shiny app for interactive microbiome analysis☆56Updated 4 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆120Updated 2 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- ☆26Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 5 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Linear Decomposition Model☆25Updated 2 years ago
- Microbiome analysis☆53Updated this week
- diversity estimation under ecological networks☆83Updated 3 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆35Updated 6 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year