MPBA / r-sparccLinks
R package computes correlation for relative abundances
☆13Updated 8 years ago
Alternatives and similar repositories for r-sparcc
Users that are interested in r-sparcc are comparing it to the libraries listed below
Sorting:
- R implementation of the LEfSe method☆63Updated 2 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- ☆42Updated 8 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Updated 2 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆129Updated 5 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 3 years ago
- R shiny app for interactive microbiome analysis☆56Updated 8 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last month
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- ☆26Updated 4 years ago
- Microbiome analysis☆54Updated this week
- R package for downstream Microbiome analysis☆31Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 6 months ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Transform files to the microtable object with microeco package☆28Updated 3 months ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆96Updated last month
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago
- Tools for visualising microbial community amplicon data☆71Updated 3 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago
- ☆16Updated 2 years ago