RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
☆60Dec 21, 2022Updated 3 years ago
Alternatives and similar repositories for classifier
Users that are interested in classifier are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of commonly used RDP Tools for easy building☆53Jun 8, 2023Updated 3 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 9 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆279Aug 21, 2026Updated 2 months ago
- Studying the statistical relationship between species and groups of sites☆14Oct 11, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tool to easily install QIIME's dependencies on Linux systems☆35Oct 14, 2015Updated 11 years ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆84May 14, 2019Updated 7 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 12 years ago
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 3 years ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- Development version of the biom package for R☆24Apr 13, 2021Updated 5 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 13 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Versatile open-source tool for microbiome analysis☆762Oct 22, 2026Updated last week
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 5 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- An extension of Velvet assembler to de novo metagenome assembly from short sequence reads☆15May 29, 2012Updated 14 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 9 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆41Jul 12, 2021Updated 5 years ago
- Microbial RNA annotation☆320Apr 12, 2026Updated 6 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 5 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆55Jan 12, 2026Updated 9 months ago
- Phylogenetic placement and downstream analysis☆95Oct 7, 2026Updated 3 weeks ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Metagenomics Analysis Tools☆24May 7, 2018Updated 8 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 8 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆50Apr 14, 2020Updated 6 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 7 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆45Mar 26, 2024Updated 2 years ago