rdpstaff / classifierLinks
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
☆57Updated 2 years ago
Alternatives and similar repositories for classifier
Users that are interested in classifier are comparing it to the libraries listed below
Sorting:
- Statistical analysis for sparse high-throughput sequencing☆69Updated 5 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- ☆23Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last month
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated 2 months ago
- Tools for visualising microbial community amplicon data☆67Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last year
- Genome wide orthology inference and dNdS estimation☆93Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- functions for analyzing phyloseq data☆27Updated 4 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆52Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆81Updated 9 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Rarefaction scripts☆17Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago