Chartiza / MicrobiomeLinks
scripts for microbiome analysis
☆11Updated last year
Alternatives and similar repositories for Microbiome
Users that are interested in Microbiome are comparing it to the libraries listed below
Sorting:
- MAG Circularization Method☆33Updated 3 years ago
- ☆26Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- ☆13Updated last year
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- ☆18Updated 3 years ago
- http://huttenhower.sph.harvard.edu/waafle☆20Updated 8 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- Bacterial GWAS analysis☆43Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- KEGG Module Evaluation Tool☆30Updated last year
- Discover and annotate the virome☆46Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆23Updated 3 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 weeks ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆20Updated 2 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- ☆16Updated 3 months ago