Chartiza / Microbiome
scripts for microbiome analysis
☆11Updated last month
Related projects: ⓘ
- ☆22Updated last year
- ☆37Updated last month
- Pipeline for metagenome and metatranscriptome joint assembly☆16Updated last year
- ☆13Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆45Updated last month
- KEGG Module Evaluation Tool☆25Updated 10 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆17Updated 6 months ago
- MAG Circularization Method☆31Updated 2 years ago
- ☆13Updated 7 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆27Updated this week
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆23Updated this week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- ☆15Updated last year
- ☆10Updated 11 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆27Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆44Updated 2 months ago
- Set of utilities on sequences and BAM files☆25Updated 2 years ago
- ☆43Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆17Updated 2 years ago
- ☆17Updated 3 weeks ago
- Population genomics from metagenomes☆10Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆48Updated 4 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆28Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆38Updated last week
- MAGScoT - a MAG scoring and refinement tool☆27Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 2 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆13Updated 2 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆9Updated 4 months ago