Chartiza / MicrobiomeLinks
scripts for microbiome analysis
☆11Updated last year
Alternatives and similar repositories for Microbiome
Users that are interested in Microbiome are comparing it to the libraries listed below
Sorting:
- ☆14Updated 2 years ago
- ☆18Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Bacterial GWAS analysis☆45Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- MAG Circularization Method☆32Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ☆26Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated 2 weeks ago
- ☆13Updated 8 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆15Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- KEGG Module Evaluation Tool☆31Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Discover and annotate the virome☆53Updated last week
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆28Updated 9 months ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 10 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated 2 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- ☆17Updated 11 months ago
- BEAV: Bacterial Element Annotation reVamped☆70Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated last week