This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
☆24Apr 21, 2026Updated 6 months ago
Alternatives and similar repositories for pipeline-v5
Users that are interested in pipeline-v5 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- List of companies☆13Dec 24, 2024Updated last year
- CWL for GDC DNASeq workflows☆24Sep 27, 2026Updated last month
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 8 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Feb 22, 2022Updated 4 years ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆11Apr 16, 2026Updated 6 months ago
- Rank-based Gene Ontology analysis of gene expression data☆43Dec 9, 2022Updated 3 years ago
- ☆29Oct 1, 2026Updated 3 weeks ago
- t-distributed stochastic neighbor embedding for microbiota data☆13May 12, 2019Updated 7 years ago
- ☆24Dec 5, 2018Updated 7 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School☆67Updated this week
- A pathway profiling tool designed for traversing metabolic pathway graphs, identifying most complete paths based on an evaluation set of …☆11Sep 10, 2026Updated last month
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- ScaleBio Single-cell RNA Nextflow Workflow☆43Aug 21, 2026Updated 2 months ago
- gutSMASH☆60Oct 3, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆188Jul 17, 2026Updated 3 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 11 months ago
- Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researcher…☆37Apr 5, 2023Updated 3 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tool to estimate genome quality of microbial eukaryotes☆48Aug 14, 2026Updated 2 months ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4…☆35Jan 13, 2023Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated this week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆26Dec 26, 2022Updated 3 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆60Sep 3, 2026Updated last month
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆40Oct 1, 2026Updated 3 weeks ago
- ☆11Aug 4, 2026Updated 2 months ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 4 years ago
- ☆22Sep 16, 2026Updated last month