Alternatives and similar repositories for tutorials

Users that are interested in tutorials are comparing it to the libraries listed below

• microbiome / mia
  Microbiome analysis
  ☆53Updated last week
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆126Updated last month
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 5 years ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆15Updated 2 years ago
• xielab2017 / EasyMicroPlot
  R package for downstream Microbiome analysis
  ☆30Updated 10 months ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆25Updated 2 years ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆122Updated 3 months ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆62Updated 3 years ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 3 years ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆94Updated last month
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated last week
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• loukesio / ggvolc
  𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …
  ☆65Updated last month
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆56Updated 4 months ago
• zellerlab / crc_meta
  Code and analysis results for the CRC shotgun meta-analysis
  ☆38Updated 3 years ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆76Updated last week
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆19Updated 3 years ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated 2 weeks ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 6 months ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆59Updated last week
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 5 years ago
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆105Updated this week
• farhadm1990 / 16S-rRNA-amplicon
  Analysis of (gut) microbiome in Qiime2 and R.
  ☆22Updated last year
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆12Updated 11 months ago
• ycl6 / 16S-rDNA-V3-V4
  16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…
  ☆37Updated 4 years ago
• gavinmdouglas / picrust2_manuscript
  ☆24Updated 5 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆34Updated 5 years ago
• jaeyunsung / GMHI_2020
  Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…
  ☆35Updated 5 years ago
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆89Updated 2 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago