id-bioinfo / TIParsLinks
Taxa Insertion by Parsimony
☆14Updated 4 months ago
Alternatives and similar repositories for TIPars
Users that are interested in TIPars are comparing it to the libraries listed below
Sorting:
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆15Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 10 months ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- Genome-Genome circle synteny☆25Updated last year
- Repository for general metagenomics Nextflow pipeline☆16Updated this week
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 3 weeks ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆16Updated last year
- Gene tree - species tree reconciliation from gene tree distributions☆29Updated this week
- ☆43Updated last year
- ☆26Updated 4 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 2 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 6 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 8 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆15Updated 2 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- convert a blast output to a bed file☆12Updated 9 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago