Alternatives and similar repositories for TIPars

Users that are interested in TIPars are comparing it to the libraries listed below

• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆34Updated 3 months ago
• moshi4 / FastDTLmapper
  Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
  ☆17Updated 2 years ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• balabanmetin / uDance
  ☆42Updated last year
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…
  ☆22Updated last month
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 2 months ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated 11 months ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated last month
• AuReMe / mpwt
  Pathway Tools multiprocessing wrapper (for PathoLogic).
  ☆14Updated 3 months ago
• gene2dis / BugBuster
  Repository for general metagenomics Nextflow pipeline
  ☆23Updated last week
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆21Updated 5 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆53Updated 11 months ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• rhysf / Diamond2GO
  Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…
  ☆23Updated 2 weeks ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• moshi4 / GBKviz
  Easy-to-use web application for visualization and comparison of genomes in Genbank file
  ☆22Updated 3 years ago
• SushiLab / mVIRs
  ☆13Updated last year
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆20Updated 5 years ago
• TurakhiaLab / ROADIES
  Tool for fully-automated inference of species trees from raw genome assemblies
  ☆41Updated last week
• DRL / kinfin
  Taxon-aware analysis of clustered protein sequences
  ☆31Updated last year
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆13Updated 2 months ago
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 6 years ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆35Updated last month
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated 2 months ago
• bayesiancook / phylobayes
  PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)
  ☆15Updated 4 years ago
• dengzac / contig-extender
  ☆22Updated last year
• linudz / caastools
  CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
  ☆21Updated 2 years ago
• msjimc / circularMT
  ☆14Updated 5 months ago