id-bioinfo / TIParsView external linksLinks
Taxa Insertion by Parsimony
☆15Jan 22, 2025Updated last year
Alternatives and similar repositories for TIPars
Users that are interested in TIPars are comparing it to the libraries listed below
Sorting:
- Stitch together Nanopore tiled amplicon data without polishing a reference☆17Jan 29, 2024Updated 2 years ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- ☆12Mar 8, 2024Updated last year
- A tool for visualization of pairwise alignments of multiple sequences☆17Aug 12, 2025Updated 6 months ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆18Dec 12, 2025Updated 2 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 7 months ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 9 months ago
- ☆17Nov 26, 2023Updated 2 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆14Feb 15, 2022Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Jan 24, 2026Updated 3 weeks ago
- ☆20Sep 6, 2024Updated last year
- Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab☆17Dec 16, 2025Updated last month
- ☆15Jan 19, 2022Updated 4 years ago
- ☆18Jun 13, 2025Updated 8 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated this week
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Feb 27, 2025Updated 11 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- An efficient assembly tool for plant mitochondrial genome☆69May 31, 2024Updated last year
- ☆26Mar 23, 2024Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Jan 31, 2022Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Feb 3, 2023Updated 3 years ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆66Apr 21, 2025Updated 9 months ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- ☆31May 29, 2024Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆28Aug 15, 2024Updated last year
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Jul 31, 2020Updated 5 years ago
- A haplotype analysis toolkit for natural variation study.☆31Oct 3, 2023Updated 2 years ago
- ☆28Mar 4, 2022Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 6 months ago
- Prophage Activity Estimator☆31May 30, 2024Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago