Alternatives and similar repositories for MATCHER:

Users that are interested in MATCHER are comparing it to the libraries listed below

• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆75Updated last year
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 3 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆42Updated 6 months ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆44Updated 11 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆37Updated 3 months ago
• lcmmichielsen / scHPL
  ☆34Updated 8 months ago
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆28Updated 4 years ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆25Updated 10 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated last year
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 3 years ago
• csjansen / SOMatic
  SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.
  ☆14Updated 4 months ago
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆21Updated 6 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 4 months ago
• bioFAM / slalom
  ☆28Updated last year
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆22Updated 2 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 5 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• asrhou / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆17Updated last month
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆39Updated last year
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆26Updated 5 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated 2 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 10 months ago
• tanlabcode / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆37Updated 4 months ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆20Updated 3 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆35Updated 3 years ago
• SUwonglab / scABC
  ☆19Updated 5 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆41Updated 2 years ago
• mohuangx / SAVER-paper
  Scripts for data and figure generation in SAVER paper
  ☆17Updated 4 years ago