Alternatives and similar repositories for nucseq_analysis

Users that are interested in nucseq_analysis are comparing it to the libraries listed below

• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• cole-trapnell-lab / monocle2-rge-paper
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆29Updated 5 years ago
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆21Updated 3 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 7 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated this week
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆22Updated last year
• juliendelile / MouseSpinalCordAtlas
  Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…
  ☆25Updated 5 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• satijalab / Integration2019
  ☆17Updated 6 years ago
• KChen-lab / SCMarker
  Marker gene selection from scRNA-seq data
  ☆15Updated 5 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 6 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• satijalab / azimuth-references
  ☆26Updated 7 months ago
• lhqing / cemba_data
  Mapping pipeline for snmC-seq based technologies.
  ☆20Updated 2 years ago
• lambdamoses / novoSpaRc
  Reconstruction of spatial context of gene expression with optimal transport
  ☆11Updated 6 years ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆21Updated 2 years ago
• BatadaLab / scID
  scID
  ☆13Updated 4 years ago
• saezlab / footprints
  Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"
  ☆20Updated 7 years ago
• veltenlab / rnamagnet
  ☆25Updated 4 months ago
• shendurelab / mouse-atac
  Repo for website and other code for mouse sci-ATAC-seq project
  ☆28Updated 5 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 6 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• molgenis / scRNA-seq
  ☆18Updated last year
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆22Updated 7 years ago