yinqingl / nucseq_analysisLinks
single nuclei RNA-seq analysis toolbox
☆10Updated 8 years ago
Alternatives and similar repositories for nucseq_analysis
Users that are interested in nucseq_analysis are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- scripts for analyzing data of macrophage development in human☆10Updated 5 years ago
- ☆16Updated 6 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- ☆13Updated 11 months ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- ☆12Updated 5 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- Landscape Single Cell Entropy☆20Updated 4 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Updated 7 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago