yinqingl / nucseq_analysis
single nuclei RNA-seq analysis toolbox
☆10Updated 8 years ago
Alternatives and similar repositories for nucseq_analysis:
Users that are interested in nucseq_analysis are comparing it to the libraries listed below
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆18Updated last year
- ☆12Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆20Updated 10 months ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- CellRank's reproducibility repository.☆14Updated 3 years ago
- Landscape Single Cell Entropy☆19Updated 4 years ago
- ☆16Updated 5 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- ☆14Updated 5 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 10 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- scripts for analyzing data of macrophage development in human☆10Updated 5 years ago
- ☆44Updated 5 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Clone identification from single-cell data☆61Updated 2 years ago