drisso / zinbwave
Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
☆43Updated 10 months ago
Alternatives and similar repositories for zinbwave:
Users that are interested in zinbwave are comparing it to the libraries listed below
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆37Updated 9 months ago
- ☆62Updated 2 months ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- ☆53Updated 3 months ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated 3 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- ☆19Updated 7 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆28Updated 5 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated 9 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- ☆37Updated 8 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 5 years ago
- Clone of the Bioconductor repository for the scater package.☆95Updated last week
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- ☆28Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago