marrlab / HematoFatePrediction
Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4182
β20Updated 2 years ago
Alternatives and similar repositories for HematoFatePrediction:
Users that are interested in HematoFatePrediction are comparing it to the libraries listed below
- Single-cell exploratory data analysis for RNA-Seqβ40Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β52Updated 11 months ago
- β28Updated 2 years ago
- β19Updated 4 years ago
- scRNAseq integration with triplet neural networksβ40Updated 2 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:β34Updated 2 years ago
- Regulatory networks with Direct Information in pythonβ40Updated 2 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq dataβ55Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genβ¦β40Updated 3 years ago
- Single-cell Hierarchical Poisson Factorizationβ69Updated 2 years ago
- Regulatory networks with Direct Informationβ16Updated 5 years ago
- β99Updated 7 months ago
- Dynamical systems methods for RNA velocity analysisβ24Updated 3 years ago
- Marker Selection by matching manifolds and elastic netβ23Updated 6 months ago
- Multi-omics studies are available hereβ51Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkitβ49Updated last year
- Dynamic models for single-cell RNA-seq time series.β40Updated 6 years ago
- Creating multi-resolution embeddings and clusters from high dimensional dataβ53Updated 7 months ago
- Data and analysis for the Splatter paperβ29Updated 7 years ago
- β21Updated 6 years ago
- Assembles a graph manifold from time series single-cell RNAseq dataβ17Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysisβ42Updated 2 years ago
- Bootstrap imputation for scRNAseq dataβ12Updated 4 years ago
- easy access to benchmark datasetsβ50Updated 6 years ago
- Deep Feature Interaction Maps (DFIM)β53Updated 6 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seqβ22Updated 2 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)β37Updated 6 months ago
- Multi-study integration of cellular trajectoriesβ19Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq dataβ24Updated 6 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasetsβ13Updated 4 years ago