marrlab / HematoFatePrediction
Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4182
☆20Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for HematoFatePrediction
- Single-cell exploratory data analysis for RNA-Seq☆39Updated 3 years ago
- scRNAseq integration with triplet neural networks☆39Updated last year
- ☆28Updated last year
- ☆19Updated 3 years ago
- Helper functions for working with inForm data.☆13Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- Single-cell Hierarchical Poisson Factorization☆66Updated 2 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆35Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆50Updated 5 months ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41Updated 2 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆50Updated 2 years ago
- ☆20Updated 3 years ago
- ☆21Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Single-cell multi-omics integration using Optimal Transport☆38Updated 2 months ago
- ☆98Updated last month
- Dimensionality reduction for single cell RNA-seq data☆35Updated 4 years ago
- MultiMAP for integration of single cell multi-omics☆53Updated last year
- ☆12Updated 5 years ago
- Data and analysis for the Splatter paper☆28Updated 6 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆48Updated last year
- ☆11Updated 9 months ago
- ☆23Updated last month
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Multi-omics studies are available here☆51Updated 2 years ago
- ☆55Updated 4 years ago
- Python client for the OmniPath web service☆39Updated 5 months ago
- easy access to benchmark datasets☆50Updated 6 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆37Updated last year