kstreet13 / bioc2020trajectoriesLinks
Trajectory inference and differential expression over multiple conditions in scRNA-seq
☆26Updated 4 years ago
Alternatives and similar repositories for bioc2020trajectories
Users that are interested in bioc2020trajectories are comparing it to the libraries listed below
Sorting:
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- ☆41Updated 4 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- ☆63Updated 6 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆45Updated 10 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- ☆63Updated 5 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- Metacell - Single-cell mRNA Analysis☆117Updated 10 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago