lima1 / sttkit
Pipeline for SpatialTranscriptomics and 10X Visium data
☆21Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for sttkit
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆33Updated 5 years ago
- ☆40Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- scRNA-seq cell type identification☆41Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- ☆29Updated 6 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- ☆31Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Clone identification from single-cell data☆59Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Spatial transcriptomics analyses and decoding in R☆18Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆37Updated 3 years ago
- ☆29Updated last year
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- An r package that works as a wrapper to homologene☆42Updated last year