lima1 / sttkit
Pipeline for SpatialTranscriptomics and 10X Visium data
☆21Updated 5 months ago
Alternatives and similar repositories for sttkit:
Users that are interested in sttkit are comparing it to the libraries listed below
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- ☆31Updated 5 years ago
- ☆29Updated last year
- ☆44Updated 5 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆18Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 6 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- ☆33Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- ☆16Updated 5 years ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Updated 3 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago