UCSD-CCAL / onco_gps_paper_analysis
Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for onco_gps_paper_analysis
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Multi-omics studies are available here☆50Updated 2 years ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆10Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆8Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆20Updated last year
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆15Updated 3 years ago
- scRNAseq integration with triplet neural networks☆39Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆41Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 3 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆19Updated last year
- Algorithms for single-cell analysis☆29Updated 3 years ago
- ☆33Updated 3 months ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆22Updated 7 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- ☆11Updated 3 years ago
- ☆40Updated 6 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- A public list of computational methods for cell type inference from genome-scale DNA methylation data☆12Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 9 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆43Updated last year
- Individual level Differential Expression Analysis for Single cells☆22Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆14Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- RNA velocity validation☆23Updated 2 years ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago