UCSD-CCAL / onco_gps_paper_analysisLinks
Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States
☆10Updated 5 years ago
Alternatives and similar repositories for onco_gps_paper_analysis
Users that are interested in onco_gps_paper_analysis are comparing it to the libraries listed below
Sorting:
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Updated 4 years ago
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- An R package for performing cell typing in SMI and other single cell data☆44Updated 6 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- Fast motif matching in R☆46Updated last year
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- ☆26Updated 6 months ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated 3 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Updated 2 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆36Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Workflow to reproduce results and figures for the second BeatAML manuscript☆13Updated 3 years ago
- ☆34Updated 6 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 3 months ago