A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
☆21Jul 28, 2025Updated 9 months ago
Alternatives and similar repositories for TMExplorer
Users that are interested in TMExplorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A domain knowledge interface for m6A genomics☆11May 13, 2019Updated 6 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12May 13, 2021Updated 4 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18Dec 18, 2024Updated last year
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 5 months ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆32May 12, 2020Updated 5 years ago
- ☆16Jul 9, 2024Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 6 months ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 2 years ago
- 网页截图，支持Video截图☆14Oct 31, 2018Updated 7 years ago
- scDissector is an exploratory data analysis tool for clustered single-cell RNA-seq data. The tool has been developed and implemented as R…☆20Jul 21, 2023Updated 2 years ago
- Gene set scoring for single-cell data☆192Feb 11, 2026Updated 2 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 4 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆24Jul 11, 2021Updated 4 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 5 months ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. randomForestSRC — Fast Unified Random Forests for Survival, Regression, an…☆10Apr 19, 2026Updated 2 weeks ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆25Jan 26, 2024Updated 2 years ago
- A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)☆16Feb 9, 2026Updated 2 months ago
- Server-side 123Pan tool - Upload ML checkpoints without interrupting training, multi-threaded downloads☆20Apr 25, 2026Updated last week
- ☆21Dec 23, 2024Updated last year
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- ALD study data analysis☆13Feb 16, 2023Updated 3 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated 2 years ago