shooshtarilab / TMExplorerLinks
A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
☆18Updated 3 years ago
Alternatives and similar repositories for TMExplorer
Users that are interested in TMExplorer are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- ☆41Updated last week
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- ☆43Updated last year
- R package for the analysis of single-cell immune repertoires☆42Updated 4 months ago
- ☆66Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆55Updated last year
- ☆56Updated last year
- Using TCR and expression for sequence embedding☆56Updated 4 months ago
- ☆21Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- Materials and scripts for building cell type encyclopedia table☆19Updated 5 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- ☆19Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆18Updated 3 years ago
- ☆37Updated 2 years ago
- ☆47Updated last year
- Tumor Immune Single-cell Hub☆21Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- ☆63Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- ☆13Updated 7 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago