shooshtarilab / TMExplorerLinks
A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
☆19Updated 4 months ago
Alternatives and similar repositories for TMExplorer
Users that are interested in TMExplorer are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- Unified access to several second-generation deconvolution methods☆88Updated last month
- Spatial transcriptomics of heart tissue☆103Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆59Updated last year
- Pan-Cancer Single Cell Classifier☆81Updated last year
- ☆61Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆82Updated 10 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 3 weeks ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Updated last year
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆56Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- ☆13Updated 7 years ago
- ☆78Updated last year
- ☆61Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- ☆57Updated last year
- Single cell omics biology annotations☆50Updated 7 months ago
- ☆19Updated 3 years ago
- Using TCR and expression for sequence embedding☆60Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- cTPnet Package☆27Updated 3 years ago
- Predict RNA velocity through deep learning☆71Updated last year
- ☆48Updated last month
- ☆65Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- ☆44Updated last year
- The R Bioconductor package for scMAGeCK.☆13Updated last year
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago