Function Enrichment analysis and Network construction
☆16Oct 26, 2026Updated last week
Alternatives and similar repositories for richR
Users that are interested in richR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Functional Enrichment Analysis and Network Construction☆10May 13, 2020Updated 6 years ago
- Build Annotation package by using information from KEGG, NCBI, Ensembl☆16May 4, 2023Updated 3 years ago
- Do microbiome analysis with dada2 and phyloseq object☆17Oct 9, 2024Updated 2 years ago
- Identify cell type based on cell markers for single cell squencing☆12Jul 10, 2024Updated 2 years ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Mar 18, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- scGSVA: Perform GSVA for single cell RNA seq☆88Sep 5, 2026Updated 2 months ago
- Export and import graphics and tables to MicroSoft office☆25Jan 14, 2026Updated 9 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated 2 years ago
- ☆10Nov 5, 2023Updated 3 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 9 months ago
- R scripts for NGS data visualization☆13Oct 1, 2025Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 6 months ago
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Visualize the results of cell-cell communication analysis☆26Jan 21, 2023Updated 3 years ago
- FunctionaL Omics Processing platform☆12Jul 25, 2024Updated 2 years ago
- A single cell transcriptome atlas of the developing zebrafish hindbrain.☆14Jan 2, 2020Updated 6 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 11 months ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and c…☆11Nov 21, 2022Updated 3 years ago
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- ☆12Jun 29, 2025Updated last year
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 4 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- Standalone shiny server container for viewing CellChat object☆15Feb 18, 2021Updated 5 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆16Apr 15, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Jan 15, 2021Updated 5 years ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆16Jul 12, 2019Updated 7 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago