Alternatives and similar repositories for richR

Users that are interested in richR are comparing it to the libraries listed below

• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated this week
• federicogiorgi / corto
  corto (Correlation Tool): an R package to generate correlation-based DPI networks
  ☆20Updated 2 years ago
• miccec / yaGST
  ☆13Updated 7 years ago
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• rnabioco / scraps
  Single-cell RNA Processing Software
  ☆11Updated last week
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• gaospecial / ccgraph
  ☆11Updated 5 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• Aufiero / circRNAprofiler
  ☆10Updated last month
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• guokai8 / VennDetail
  VennDetail: a bioconductor package for VennDiagram visualization and details extraction
  ☆29Updated 2 months ago
• sjdlabgroup / Census
  Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
  ☆12Updated 5 months ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• dosorio / SCORPION
  Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…
  ☆9Updated last year
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• jokergoo / BioCartaImage
  BioCarta pathway images
  ☆11Updated last year
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆18Updated 3 weeks ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• YuLab-SMU / clusterProfiler_protocol
  omics data analysis using clusterProfiler ;)
  ☆13Updated last year
• cozygene / TCA
  ☆18Updated 4 years ago
• Core-Bioinformatics / bulkAnalyseR
  ☆28Updated last year
• dunnlab / cellphylo
  ☆13Updated last year
• xiayh17 / RNAseqStat2
  ☆16Updated 2 years ago