lkmklsmn / MitoTrace
☆14Updated 3 months ago
Related projects: ⓘ
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆40Updated 7 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- ☆30Updated 5 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆14Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆41Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆14Updated 8 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆18Updated 3 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆48Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last year
- ☆18Updated 6 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆15Updated 11 months ago
- ☆28Updated 4 months ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆16Updated 4 years ago
- A pipeline for scRNA-seq data analysis☆12Updated 8 months ago
- R package of CSOmap(developing☆14Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆18Updated 8 months ago
- ☆11Updated 10 months ago
- ☆25Updated 3 weeks ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated 8 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆29Updated last year
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆12Updated last year
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆9Updated 4 months ago
- Functions for single cell data analysis☆22Updated 3 years ago
- ☆45Updated 11 months ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆13Updated 4 months ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago