Alternatives and similar repositories for cancer_data

Users that are interested in cancer_data are comparing it to the libraries listed below

• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆10Updated 3 years ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated 9 months ago
• UMCUGenetics / mutSigExtractor
  An R package for extracting mutational signatures from vcf files
  ☆10Updated 5 months ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆43Updated 2 weeks ago
• HelenaLC / simulation-comparison
  Snakemake workflow to benchmark scRNA-seq data simulators
  ☆13Updated 2 years ago
• AprilYuge / ResPAN
  a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction
  ☆15Updated 2 years ago
• KlugerLab / ALRA-paper
  ☆9Updated 3 years ago
• bio-ontology-research-group / DeepMOCCA
  Graph Neural Network model for survival analysis from multi-omics data
  ☆13Updated 3 years ago
• carmonalab / TILPRED
  Tumor-Infiltrating CD8 Lymphocytes states prediction
  ☆12Updated last year
• gerstung-lab / tensorsignatures
  A python package for learning mutational signatures and their multidimensional genomic properties
  ☆15Updated 4 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 11 months ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆25Updated 11 months ago
• mskcc / mimsi
  Microsatellite Instability Classification using Multiple Instance Learning
  ☆24Updated 5 months ago
• Roy-lab / HiC-Reg
  HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals
  ☆11Updated 4 years ago
• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 9 months ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆34Updated 4 years ago
• ding-lab / VirusScan
  VirusScan Pipeline
  ☆11Updated 6 months ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆23Updated last week
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 3 years ago
• bowang-lab / OCAT
  ☆18Updated 9 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 4 years ago
• jishnu-lab / SLIDE
  ☆27Updated last month