kevinhu / cancer_data
A unified downloader+preprocessor for cancer genomics datasets
☆14Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for cancer_data
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆12Updated 9 months ago
- Microsatellite Instability Classification using Multiple Instance Learning☆19Updated 3 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 3 weeks ago
- Graph Neural Network model for survival analysis from multi-omics data☆11Updated 2 years ago
- An R package for extracting mutational signatures from vcf files☆9Updated 2 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated last month
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Single Cell Consensus Clustering with Speed☆19Updated last year
- Overview of GDC Harmonization Workflows☆27Updated last year
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆12Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 2 years ago
- Materials and scripts for building cell type encyclopedia table☆15Updated 2 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆19Updated this week
- ☆19Updated 3 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 2 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- XEnograft Visualization & Analysis☆9Updated last year
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated last year
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 4 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆23Updated last year
- MultiMAP for integration of single cell multi-omics☆53Updated last year
- Tools for assessing clustering robustness☆22Updated last week
- Summary statistics for repertoires☆16Updated last year
- ☆10Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 2 years ago
- ☆11Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆14Updated 4 years ago