A unified downloader+preprocessor for cancer genomics datasets
☆16Apr 7, 2024Updated 2 years ago
Alternatives and similar repositories for cancer_data
Users that are interested in cancer_data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- Graph Neural Network model for survival analysis from multi-omics data☆14Mar 9, 2022Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37May 30, 2026Updated 2 weeks ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆25Feb 13, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Jun 6, 2022Updated 4 years ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated last year
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆18Oct 25, 2024Updated last year
- Tutorials for the crisprVerse☆16Feb 10, 2025Updated last year
- Making survival analysis work in TensorFlow☆19Jun 4, 2017Updated 9 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125May 21, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago
- Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learning☆10Mar 19, 2024Updated 2 years ago
- ☆11Jul 18, 2022Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- Data science in R notes☆15Apr 28, 2025Updated last year
- Readme☆10Mar 15, 2020Updated 6 years ago
- ☆16Jan 18, 2023Updated 3 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Mar 5, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 命例☆10Sep 27, 2018Updated 7 years ago
- Benchmarking of deep learning and other segmentation methods for H&E images☆11Jul 6, 2023Updated 2 years ago
- Preprocessing module for large histological images☆22Jun 16, 2023Updated 3 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆28Nov 12, 2024Updated last year
- ☆11Jul 6, 2023Updated 2 years ago
- A Bioconductor package to retrieve and analyze data from the Human Protein Atlas☆39Dec 7, 2025Updated 6 months ago
- Concept bottleneck models for multiview data with incomplete concept sets☆17Nov 24, 2023Updated 2 years ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- Code accompanying the paper "Multimodal fusion of imaging and genomics for lung cancer recurrence prediction" - Vaishnavi Subramanian, Mi…☆18May 31, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TCGA data downloader☆16Oct 10, 2018Updated 7 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- ☆19Jul 4, 2023Updated 2 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Dec 11, 2025Updated 6 months ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago