Elisseeff-Lab / dominoLinks
A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware that an improved package, dominoSignal, is available.
☆18Updated last year
Alternatives and similar repositories for domino
Users that are interested in domino are comparing it to the libraries listed below
Sorting:
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 7 months ago
- ☆41Updated 4 years ago
- Cell type pipes for R☆52Updated last year
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆44Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 4 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆95Updated 7 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- Collection of cell type reference datasets.☆62Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆32Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 2 weeks ago
- ☆61Updated 4 months ago
- A tool for removing doublets from single-cell RNA-seq data☆76Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆49Updated 9 months ago
- ☆50Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆34Updated last week
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆38Updated last year
- An r package that works as a wrapper to homologene☆48Updated 2 years ago
- ☆43Updated 5 years ago