A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity (now archived). Please see the newest version, dominoSignal.
☆20May 13, 2026Updated 5 months ago
Alternatives and similar repositories for domino
Users that are interested in domino are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- A quick, free tool for single-cell annotation using large language models☆13Nov 27, 2025Updated 11 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last month
- Identify spatially variable genes by projecting to morphologically relevant curves☆11Jul 12, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆19Sep 23, 2026Updated last month
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 7 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆46Oct 10, 2025Updated last year
- Cell cycle pseudotime in single-cell RNA-seq☆10Mar 31, 2025Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆87Jul 25, 2025Updated last year
- ☆11Nov 29, 2022Updated 3 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 5 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆245Mar 2, 2026Updated 8 months ago
- Identifying external communication signals using single-cell transcriptomics data☆22Jun 10, 2024Updated 2 years ago
- A package for comparing cell type abundances between conditions☆12Oct 14, 2026Updated 2 weeks ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Single-cell RNA-seq analysis of human germline cells and their niche cells☆11Jun 6, 2017Updated 9 years ago
- ☆12Jun 29, 2025Updated last year
- Bayesian MCMC matrix factorization algorithm☆74Aug 12, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Machine learning-based identification of tumor-infiltrating immune cell-associated lncRNAs for improving outcomes and immunotherapy respo…☆14Sep 7, 2022Updated 4 years ago
- LRLoop☆10Oct 20, 2025Updated last year
- ☆16Sep 1, 2023Updated 3 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- ☆19Jun 15, 2023Updated 3 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆12Sep 25, 2017Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 10 months ago
- Cell clustering and communication network inference for single-cell transcriptomics☆14Sep 18, 2024Updated 2 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- Easy single cell analysis platform for enrichment☆238Updated this week