Alternatives and similar repositories for UCSCXenaShiny

Users that are interested in UCSCXenaShiny are comparing it to the libraries listed below

• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆86Updated 7 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆94Updated 8 months ago
• YuLab-SMU / fanyi
  Translate Words or Sentences via Online Translators
  ☆53Updated last month
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆108Updated 7 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 4 months ago
• xjsun1221 / RSEM_with_limma_edgeR_Deseq2
  ☆37Updated 4 years ago
• xlucpu / MOVICS
  Multi-Omics integration and VIsualization in Cancer Subtyping
  ☆144Updated 3 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆73Updated 2 months ago
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆93Updated 3 years ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆77Updated 2 years ago
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆67Updated last year
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆163Updated this week
• bioconductor-china / basic
  是基础也是综合(一系列对象及函数，需要细致的讲解)
  ☆30Updated 9 years ago
• JhuangLab / CytoTree
  A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
  ☆28Updated 4 years ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆153Updated 8 months ago
• xjsun1221 / tinyarray
  plots function for array
  ☆93Updated last year
• BCCHR-trainee-omics-group / StudyGroup
  This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.
  ☆42Updated last year
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆64Updated this week
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆60Updated 2 years ago
• Asa12138 / ReporterScore
  Generalized Reporter Score-based Functional Enrichment Method for Omics Data
  ☆73Updated last week
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 6 months ago
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated 3 weeks ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆130Updated 7 months ago
• Lindseynicer / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆66Updated 3 years ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆117Updated 9 months ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆246Updated last month