Alternatives and similar repositories for UCSCXenaShiny

Users that are interested in UCSCXenaShiny are comparing it to the libraries listed below

• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆93Updated 4 years ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆99Updated last year
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆112Updated this week
• xjsun1221 / RSEM_with_limma_edgeR_Deseq2
  ☆37Updated 5 years ago
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆64Updated 2 years ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆99Updated last year
• pwwang / plotthis
  plotthis is an R package that is built upon ggplot2 and other plotting packages.
  ☆83Updated this week
• wjawaid / enrichR
  An R interface to enrichR
  ☆94Updated last year
• jokergoo / ComplexHeatmap_v2_paper_code
  ☆20Updated 3 years ago
• YuLab-SMU / fanyi
  Translate Words or Sentences via Online Translators
  ☆57Updated last week
• CBIIT / LDlinkR
  LDlinkR
  ☆63Updated last year
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆158Updated last month
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆67Updated last year
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆68Updated 2 years ago
• junjunlab / jjAnno
  An annotation package for ggplot plot
  ☆119Updated 2 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆100Updated 4 years ago
• xlucpu / MOVICS
  Multi-Omics integration and VIsualization in Cancer Subtyping
  ☆146Updated 4 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• openbiox / Bizard
  Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/
  ☆35Updated last week
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆70Updated 2 weeks ago
• rezakj / iCellR
  iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …
  ☆128Updated 3 months ago
• jmzeng1314 / idmap3
  ☆33Updated 5 years ago
• bioconductor-china / basic
  是基础也是综合(一系列对象及函数，需要细致的讲解)
  ☆30Updated 9 years ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last week
• jmzeng1314 / biotrainee
  ☆37Updated 7 years ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆162Updated 3 weeks ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• YuLab-SMU / ggsc
  🧠 Visualizing Single Cell and Spatial Transcriptomics
  ☆50Updated 3 months ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆85Updated this week
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆124Updated last week