📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.zhoulab.ac.cn/UCSCXenaShiny, https://shiny.hiplot.cn/ucsc-xena-shiny/, http://biotree.top:38124/UCSCXenaShiny/
☆104Feb 8, 2026Updated 2 months ago
Alternatives and similar repositories for UCSCXenaShiny
Users that are interested in UCSCXenaShiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆113Feb 6, 2026Updated 2 months ago
- Cancer circRNA identification pipeline with an ensemble approach☆18Dec 4, 2024Updated last year
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- plots function for array☆99Jun 13, 2024Updated last year
- ☆17Dec 15, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-Omics integration and VIsualization in Cancer Subtyping☆147Jul 19, 2021Updated 4 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 5 months ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Dec 3, 2025Updated 4 months ago
- ☆51Feb 16, 2022Updated 4 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆284Apr 9, 2026Updated last week
- Learn and practice the bioinformatics skills in 100 Days.☆81Sep 26, 2019Updated 6 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 6 years ago
- ☆12Dec 5, 2018Updated 7 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 weeks ago
- Source code of openbiox homepage (under development status).☆14May 9, 2023Updated 2 years ago
- 基于rstudio、code-server、jupyter-lab的dockerfile,用于快速搭建数据分析环境。☆57Nov 14, 2022Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- ☆10Aug 22, 2018Updated 7 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A General Framework for Consensus Partitioning☆64Jan 30, 2026Updated 2 months ago
- ☆10Jan 21, 2023Updated 3 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- ESTIMATE tumor infiltration, the tidy way☆18Aug 22, 2023Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆533Apr 6, 2026Updated last week
- Shiny Interactive Web Apps for Single-Cell Data☆206Apr 24, 2025Updated 11 months ago
- ☆14Oct 14, 2022Updated 3 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆11Dec 27, 2020Updated 5 years ago
- a user-friendly and modular design R package tailored for analyzing single-cell and spatial transcriptome sequencing data of hematopoieti…☆18Apr 17, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Jul 8, 2018Updated 7 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- R/Package Version Check☆22Oct 22, 2021Updated 4 years ago
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- Toolbox package for organizing and working with TCGA data☆28Mar 26, 2026Updated 2 weeks ago
- ☆18Aug 19, 2019Updated 6 years ago