Alternatives and similar repositories for UCSCXenaShiny

Users that are interested in UCSCXenaShiny are comparing it to the libraries listed below

• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆93Updated 3 years ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆87Updated 8 months ago
• jokergoo / ComplexHeatmap_v2_paper_code
  ☆20Updated 3 years ago
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆109Updated 8 months ago
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• YuLab-SMU / fanyi
  Translate Words or Sentences via Online Translators
  ☆53Updated 2 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆95Updated 9 months ago
• junjunlab / jjAnno
  An annotation package for ggplot plot
  ☆115Updated 2 years ago
• bioconductor-china / basic
  是基础也是综合(一系列对象及函数，需要细致的讲解)
  ☆30Updated 9 years ago
• xjsun1221 / RSEM_with_limma_edgeR_Deseq2
  ☆37Updated 5 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 5 months ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆153Updated 9 months ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆73Updated 3 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 9 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆96Updated 3 years ago
• jmzeng1314 / biotrainee
  ☆37Updated 6 years ago
• wangshisheng / NAguideR
  NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses
  ☆47Updated last month
• jmzeng1314 / GEOmirror
  ☆43Updated 4 years ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆116Updated 10 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 6 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆106Updated this week
• rli012 / GDCRNATools
  GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
  ☆66Updated last year
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆64Updated 3 weeks ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆78Updated 2 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆55Updated 2 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆68Updated last year
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆62Updated 2 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 6 months ago