📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.zhoulab.ac.cn/UCSCXenaShiny, https://shiny.hiplot.cn/ucsc-xena-shiny/, http://biotree.top:38124/UCSCXenaShiny/
☆104Feb 8, 2026Updated 2 months ago
Alternatives and similar repositories for UCSCXenaShiny
Users that are interested in UCSCXenaShiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆114Feb 6, 2026Updated 3 months ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Cancer circRNA identification pipeline with an ensemble approach☆18Dec 4, 2024Updated last year
- plots function for array☆101Jun 13, 2024Updated last year
- ☆17Dec 15, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multi-Omics integration and VIsualization in Cancer Subtyping☆147Jul 19, 2021Updated 4 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 6 months ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 5 months ago
- ☆51Feb 16, 2022Updated 4 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆288Apr 27, 2026Updated last week
- Learn and practice the bioinformatics skills in 100 Days.☆82Sep 26, 2019Updated 6 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 6 years ago
- ☆12Dec 5, 2018Updated 7 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- Source code of openbiox homepage (under development status).☆14May 9, 2023Updated 2 years ago
- 基于rstudio、code-server、jupyter-lab的dockerfile,用于快速搭建数据分析环境。☆57Nov 14, 2022Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- ☆10Aug 22, 2018Updated 7 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Jan 21, 2023Updated 3 years ago
- A General Framework for Consensus Partitioning☆64Jan 30, 2026Updated 3 months ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 3 years ago
- ESTIMATE tumor infiltration, the tidy way☆18Aug 22, 2023Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆538Apr 6, 2026Updated last month
- Shiny Interactive Web Apps for Single-Cell Data☆208Apr 24, 2025Updated last year
- ☆14Oct 14, 2022Updated 3 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆11Dec 27, 2020Updated 5 years ago
- a user-friendly and modular design R package tailored for analyzing single-cell and spatial transcriptome sequencing data of hematopoieti…☆18Apr 17, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆30Jul 8, 2018Updated 7 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- R/Package Version Check☆22Oct 22, 2021Updated 4 years ago
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago
- Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/☆52Apr 21, 2026Updated 2 weeks ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- Toolbox package for organizing and working with TCGA data☆29Apr 29, 2026Updated last week