Code related to scRNA analysis using the scAmpi workflow
☆26Jun 24, 2026Updated 4 months ago
Alternatives and similar repositories for scAmpi_single_cell_RNA
Users that are interested in scAmpi_single_cell_RNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 11 months ago
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Jul 9, 2026Updated 3 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- Single Cell RNA Intron-Exon counting☆12May 7, 2020Updated 6 years ago
- Computational pipelines for processing of paired-end Illumina reads☆11Dec 11, 2023Updated 2 years ago
- BEER: Batch EffEct Remover for single-cell data☆26Jan 9, 2025Updated last year
- GenePiper☆12Mar 13, 2022Updated 4 years ago
- ☆18Dec 18, 2023Updated 2 years ago
- A Finetuned model for Enhancer prediction and our generative Cumulative Enhancer Dataset☆12Mar 26, 2026Updated 7 months ago
- weighted indexes for clustering evaluation☆16Apr 18, 2020Updated 6 years ago
- ☆14Jun 1, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- A portable and fast single cell type identifier☆63May 12, 2021Updated 5 years ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq pipeline.☆10Apr 7, 2020Updated 6 years ago
- Function Enrichment analysis and Network construction☆16Oct 26, 2026Updated last week
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- ☆94Aug 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A networks analysis pipeline for RNASeq time series data☆14Oct 16, 2020Updated 6 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 3 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆28Mar 7, 2024Updated 2 years ago
- remove single cells Doublets by integrating tools!☆21Jun 3, 2022Updated 4 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆15Oct 19, 2023Updated 3 years ago
- single-cell graph autoencoder☆25Oct 14, 2021Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆59Jun 29, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15Aug 17, 2023Updated 3 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆24Sep 30, 2022Updated 4 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- ☆29Sep 4, 2023Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Jul 23, 2026Updated 3 months ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago