ETH-NEXUS / scAmpi_single_cell_RNALinks
Code related to scRNA analysis using the scAmpi workflow
☆27Updated 3 months ago
Alternatives and similar repositories for scAmpi_single_cell_RNA
Users that are interested in scAmpi_single_cell_RNA are comparing it to the libraries listed below
Sorting:
- ☆23Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 weeks ago
- ☆32Updated 7 months ago
- ☆29Updated 2 years ago
- ☆51Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Easy and comprehensive biological network reconstruction and analysis☆32Updated last week
- ☆20Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- ☆39Updated 4 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last year
- ☆25Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- Network construction Algorithm☆22Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 4 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- Tools for assessing clustering robustness☆25Updated last week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated last month
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 5 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago