Alternatives and similar repositories for bhofmei-jbplugins:

Users that are interested in bhofmei-jbplugins are comparing it to the libraries listed below

• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 2 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆29Updated 11 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• Mesh89 / TranSurVeyor
  A transposition caller.
  ☆10Updated last year
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 weeks ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆26Updated 11 months ago
• bhofmei / jbplugin-smallrna
  JBrowse plugin that supports smallRNA alignments
  ☆12Updated 6 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated last year
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 3 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 4 years ago
• jdaron / CLARI-TE
  ☆10Updated 10 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆23Updated 3 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 11 months ago
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 6 years ago
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• Gabaldonlab / jloh
  A tool to extract LOH blocks from VCF, BAM and FASTA data
  ☆21Updated 7 months ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• birneylab / flexlmm
  Flexible linear mixed model framework for Genome Wide Association Studies
  ☆19Updated 2 months ago
• bergmanlab / ngs_te_mapper2
  Software for detecting transposable element insertions from next-generation sequencing data
  ☆9Updated 2 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆25Updated 3 weeks ago