bhofmei / bhofmei-jbpluginsLinks
All JBrowse plugins created by Brigitte Hofmeister
☆10Updated 7 years ago
Alternatives and similar repositories for bhofmei-jbplugins
Users that are interested in bhofmei-jbplugins are comparing it to the libraries listed below
Sorting:
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 6 months ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Tools for merging Tandem Repeat VCF files☆37Updated 7 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- A series of scripts to automate sequence workflows☆19Updated 6 months ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 8 months ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 6 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- ☆29Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- ☆11Updated 2 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 8 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Population-wide Deletion Calling☆35Updated 7 months ago