Alternatives and similar repositories for gwasviewer

Users that are interested in gwasviewer are comparing it to the libraries listed below

• bhofmei / jbplugin-methylation
  JBrowse plugin for methylation related things
  ☆16Updated 7 years ago
• tomh1lll / dudeml
  detection of duplications and deletions using Python based machine learning techniques
  ☆28Updated 6 years ago
• TGAC / NanoOK
  Analysis tool for Nanopore sequencing data
  ☆34Updated 6 years ago
• najoshi / sabre
  ☆63Updated 4 years ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• bhofmei / jbplugin-smallrna
  JBrowse plugin that supports smallRNA alignments
  ☆12Updated 6 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆63Updated 3 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 4 years ago
• robsyme / nextflow-annotate
  Workflows I find helpful for fungal genome annotation
  ☆21Updated 2 years ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆86Updated 6 years ago
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆51Updated 4 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆36Updated last year
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆51Updated 3 years ago
• bhofmei / bhofmei-jbplugins
  All JBrowse plugins created by Brigitte Hofmeister
  ☆10Updated 7 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 6 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆47Updated 3 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆53Updated 7 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 2 weeks ago
• tanghaibao / mcscan
  Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
  ☆21Updated 15 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆38Updated 2 years ago
• galaxy-genome-annotation / docker-jbrowse
  Docker image of JBrowse Genome Browser
  ☆15Updated 4 years ago
• mills-lab / svelter
  Approach to identify simple and complex structural genomic rearrangements using a randomized approach
  ☆21Updated 6 years ago
• jonathancrabtree / Circleator
  Flexible circular visualization of genome-associated data with BioPerl and SVG.
  ☆47Updated 6 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 5 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆49Updated 4 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆80Updated last month
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 5 months ago
• lexnederbragt / developments-in-next-generation-sequencing
  Developments in next generation sequencing: instruments, read lengths, throughput. See
  ☆27Updated 7 years ago