tao-bioinfo / gff3sortLinks
GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
☆51Updated 5 years ago
Alternatives and similar repositories for gff3sort
Users that are interested in gff3sort are comparing it to the libraries listed below
Sorting:
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- PHAST☆77Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 4 months ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆90Updated this week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated 3 weeks ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- parallelized blat with multi-threads support☆53Updated 10 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- My bioinfo toolbox☆50Updated 10 months ago
- Tools for analyzing DNA methylation data☆44Updated this week
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆105Updated last week
- A collection of command line tools for working with sequencing data☆52Updated 2 weeks ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated this week
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago