GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
☆50Jun 27, 2020Updated 6 years ago
Alternatives and similar repositories for gff3sort
Users that are interested in gff3sort are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Mar 5, 2018Updated 8 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated last month
- JBrowse 1.x Plugin Registry☆14Sep 10, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆25Feb 24, 2026Updated 7 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- source code for EVM☆129Sep 22, 2026Updated 3 weeks ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 8 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 2 months ago
- Visualising discordant reads☆16Sep 2, 2015Updated 11 years ago
- Python programs for processing GFF3 files☆105Oct 8, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Command-line tool for the visualization of splicing events across multiple samples☆143Jun 28, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif☆10Aug 13, 2025Updated last year
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Aug 27, 2020Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆31Sep 21, 2024Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GenomeTools genome analysis system.☆342Nov 10, 2025Updated 11 months ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- ☆14Jul 27, 2019Updated 7 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆18Oct 6, 2025Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- Genome Scripts used in fungal comparative genomics☆66Sep 25, 2020Updated 6 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆25Dec 1, 2022Updated 3 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 7 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago