tao-bioinfo / gff3sort
GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
☆48Updated 4 years ago
Alternatives and similar repositories for gff3sort:
Users that are interested in gff3sort are comparing it to the libraries listed below
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Error correction of ONT transcript reads☆59Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆37Updated last week
- PHAST☆72Updated last week
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- A software for calculating telomere length☆68Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆61Updated last month
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 10 months ago
- web documentation for Trinotate☆48Updated 2 years ago
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- Evolutionary Transcriptomics with R☆42Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- Tools for analyzing DNA methylation data☆38Updated last month
- ☆26Updated last week
- processing 10x genomics reads☆25Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Long Reads Annotation pipeline☆71Updated 2 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆19Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago