GMOD / JBrowseR
R interface to the JBrowse 2 Linear Genome View.
☆35Updated 6 months ago
Related projects: ⓘ
- An htmlwidget version of igv, for RStudio and Shiny apps☆36Updated 3 weeks ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆18Updated 7 years ago
- R package wrapping bedtools☆37Updated 3 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆23Updated 6 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ☆17Updated 3 weeks ago
- A shiny package for microbiome functional enrichment analysis☆36Updated last month
- Representation and manipulation of genomic intervals☆43Updated 3 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆35Updated 2 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆10Updated 8 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆24Updated 2 years ago
- ☆10Updated 4 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆29Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆41Updated 8 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆32Updated 4 months ago
- A tidyverse and grammar of graphics powered line traces visualizer☆26Updated 2 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆44Updated last year
- Genomic plot in trellis layout☆39Updated 6 months ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆19Updated 6 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆15Updated 4 months ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated last week
- A comprehensive and customizable R package for microbiome analysis.☆20Updated last year
- Talk to the NCBI EUtils☆20Updated 3 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆30Updated last week
- Isoform-level functional RNA-Seq analysis☆20Updated 2 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆12Updated 3 years ago