andrewjpage / tiptoftLinks
Predict plasmids from uncorrected long read data
☆41Updated 2 weeks ago
Alternatives and similar repositories for tiptoft
Users that are interested in tiptoft are comparing it to the libraries listed below
Sorting:
- Order and orientation of complete bacterial genomes☆29Updated 4 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- Recombination-free trees☆60Updated 2 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated this week
- A tool for removing redundant genomes from a set of assemblies☆77Updated 2 months ago
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Metagenomic Analysis in Real Time☆28Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Calculate assocations between genes and traits☆28Updated 8 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated last year
- ☆56Updated 2 weeks ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- Gene-flank analysis tool☆33Updated 10 months ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month