Alternatives and similar repositories for StORF-Reporter

Users that are interested in StORF-Reporter are comparing it to the libraries listed below

• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆26Updated 2 months ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆30Updated 2 years ago
• jolespin / pykofamsearch
  Fast implementation of KofamScan optimized for high-memory systems using PyHMMER
  ☆14Updated 4 months ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• cruizperez / FastAAI
  ☆24Updated 11 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated 2 months ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 10 months ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆36Updated last year
• bluenote-1577 / fairy
  alignment-free coverage calculation for metagenomic binning >100 times faster
  ☆48Updated 9 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year
• tseemann / scripts
  Miscellaneous Perl scripts from 20 years in microbial bioinformatics
  ☆18Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆46Updated 2 months ago
• kshulgina / codetta
  ☆52Updated 8 months ago
• moshi4 / pybarrnap
  Python implementation of barrnap (Bacterial ribosomal RNA predictor)
  ☆23Updated 11 months ago
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated last month
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆41Updated last year
• CFIA-NCFAD / wgscovplot
  The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…
  ☆19Updated last year
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 8 months ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• althonos / pysylph
  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
  ☆20Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆46Updated 9 months ago
• moshi4 / MGCplotter
  Microbial Genome Circular plotting tool for comparative genomics using Circos
  ☆38Updated 2 years ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆52Updated 4 years ago
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated last year
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• santirdnd / COPLA
  A taxonomic classifier of plasmids
  ☆28Updated 4 years ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆63Updated 9 months ago
• yosuken / ccfind
  ccfind - circular complete genome finder with clues of terminal redundancy
  ☆16Updated 5 years ago
• kussell-lab / mcorr
  Inferring bacterial recombination rates from large-scale sequencing datasets.
  ☆41Updated 2 years ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated 2 months ago