Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)
☆17Jan 15, 2026Updated 4 months ago
Alternatives and similar repositories for StORF-Reporter
Users that are interested in StORF-Reporter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 3 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆26Mar 25, 2023Updated 3 years ago
- Support scripts for the visualisation of pangenome analyses in Graphia☆21Oct 7, 2024Updated last year
- zDB: comparative bacterial genomics made easy☆40May 6, 2026Updated last month
- ☆14Mar 12, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Just another minhash implementation.☆12May 28, 2026Updated last week
- Pipeline for homeobox gene identification☆11Aug 8, 2023Updated 2 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 8 months ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Apr 27, 2026Updated last month
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆28Mar 25, 2023Updated 3 years ago
- A comprehensive prokaryotic genome annotation pipeline☆87Updated this week
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated last month
- ☆16Jun 21, 2022Updated 3 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- Clann: Investigation of phylogenomic signal using supertrees☆18Apr 21, 2026Updated last month
- A package for Unicode-friendly string compression using Unishox2☆24Nov 5, 2022Updated 3 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Oct 6, 2020Updated 5 years ago
- Genome-Genome circle synteny☆25Dec 1, 2023Updated 2 years ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 5 months ago
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- A script for comparing old vs new versions of genome annotations☆23Aug 1, 2023Updated 2 years ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Analysis and Visualization of Ribosome Profiling Data☆31Aug 29, 2025Updated 9 months ago
- A list of resources to learn about data stewardship☆16Dec 2, 2025Updated 6 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- Find clustered hits from a BLAST search☆142Jan 16, 2026Updated 4 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆24Apr 30, 2026Updated last month