sjaenick / pprodigalLinks
Python3 wrapper for parallelized gene prediction using Prodigal
☆11Updated 2 years ago
Alternatives and similar repositories for pprodigal
Users that are interested in pprodigal are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated last week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Updated last year
- Prophage Activity Estimator☆30Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆15Updated last week
- ☆16Updated 8 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆36Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated last week
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Updated 3 years ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- ☆33Updated 3 months ago
- ☆24Updated 11 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ☆34Updated 2 years ago
- Metabolic scanning and annotation of Metagenomes☆10Updated last month
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated last month
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆30Updated 4 months ago
- ☆38Updated 2 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆33Updated last month
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year