Alternatives and similar repositories for proteomesoflife

Users that are interested in proteomesoflife are comparing it to the libraries listed below

• GreiffLab / immuneSIM
  ☆38Updated last year
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 9 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆18Updated last year
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆24Updated 4 years ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆24Updated last month
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated 2 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated this week
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆61Updated 2 weeks ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆38Updated 2 months ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆47Updated 3 years ago
• kuanrongchan / STAGES
  ☆36Updated 9 months ago
• xiongxslab / Translatomer
  ☆24Updated 2 months ago
• mhorlacher / rbpnet
  ☆18Updated last year
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆11Updated 5 years ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 7 years ago
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆14Updated 9 months ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆28Updated last week
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆39Updated last week
• IEDB / TCRMatch
  ☆31Updated 4 months ago
• vrmelo / SPLICE-q
  SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
  ☆12Updated 2 years ago
• hart-lab / drugz
  DRUGZ software
  ☆24Updated 4 years ago