MannLabs / proteomesoflifeLinks
python based queries for the proteomesoflife neo4j network database
☆14Updated 5 years ago
Alternatives and similar repositories for proteomesoflife
Users that are interested in proteomesoflife are comparing it to the libraries listed below
Sorting:
- ☆38Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 7 months ago
- Python package to load and query ARCHS4 data☆23Updated last month
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- ☆18Updated last year
- DIABLO - an integrative multi-group, multi-dataset classification method☆25Updated 6 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆17Updated 11 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 2 months ago
- Scripts for building computational models of gene regulation with tensorflow☆11Updated 5 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆24Updated 4 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Estimate PTM hotspots in protein sequence alignments☆14Updated 6 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆59Updated last week
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- R package for functionally scoring phosphorylation sites☆21Updated 5 years ago
- MHC Class I and Class II neoantigen binding prediction☆32Updated last month
- ☆29Updated 2 months ago
- Functional Embedding of Gene Signatures☆46Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆38Updated last week
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- flexible CDR based distance metrics☆66Updated last year
- ☆21Updated 4 years ago