ding-lab / PanCan_snATAC_publicationLinks
☆17Updated 10 months ago
Alternatives and similar repositories for PanCan_snATAC_publication
Users that are interested in PanCan_snATAC_publication are comparing it to the libraries listed below
Sorting:
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- ☆55Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆22Updated 2 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆9Updated 11 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- ☆12Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- Code used to process the data of the HBCA project☆27Updated last year
- ☆16Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆16Updated 2 years ago
- ☆26Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆12Updated last year
- Computational pipeline to process EasySci-RNA data.☆20Updated last year
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆16Updated 3 weeks ago
- ☆12Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year