Code repository for single-cell atlas of Alzheimer's disease progression across brain regions
☆42Apr 23, 2024Updated last year
Alternatives and similar repositories for admultiregion_analysis
Users that are interested in admultiregion_analysis are comparing it to the libraries listed below
Sorting:
- ☆21May 6, 2025Updated 9 months ago
- single-cell decorrelated module networks☆30Aug 24, 2024Updated last year
- ☆18Jul 3, 2022Updated 3 years ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated 10 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Mar 7, 2024Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆89Oct 9, 2024Updated last year
- AD regulome analysis☆14Apr 4, 2023Updated 2 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Apr 30, 2022Updated 3 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated 2 months ago
- ☆25Feb 20, 2025Updated last year
- BANKSY: spatial clustering☆137Oct 15, 2025Updated 4 months ago
- ☆19Dec 15, 2023Updated 2 years ago
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆21May 1, 2024Updated last year
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- ☆20Sep 8, 2023Updated 2 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆28Mar 4, 2024Updated 2 years ago
- ☆21Updated this week
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 3 months ago
- A tool for semi-automatic cell type harmonization and integration☆118Nov 3, 2025Updated 4 months ago
- ☆21Dec 23, 2024Updated last year
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆19Sep 24, 2024Updated last year
- ImageJ macro for microglia morphology analysis☆17Jan 13, 2026Updated last month
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- ☆25Aug 24, 2023Updated 2 years ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆27Jul 8, 2025Updated 7 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆97Jul 1, 2021Updated 4 years ago
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Jul 2, 2025Updated 8 months ago
- Docker container for Illumina bcl2fastq☆11Aug 7, 2024Updated last year
- ☆11Sep 7, 2023Updated 2 years ago
- ☆13Updated this week
- ☆13Jun 6, 2024Updated last year
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆12Sep 30, 2024Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- ☆33Jun 4, 2024Updated last year