cboix / admultiregion_analysis
Code repository for single-cell atlas of Alzheimer's disease progression across brain regions
☆29Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for admultiregion_analysis
- ☆13Updated 3 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆33Updated this week
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated last month
- scWGCNA☆54Updated 2 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆39Updated this week
- identifying disease critical cell types and programs from single cell RNAseq☆49Updated 2 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆32Updated 2 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆56Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆46Updated this week
- ☆37Updated 10 months ago
- ☆53Updated 10 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 2 months ago
- Pan-Cancer Single Cell Classifier☆60Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆25Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆23Updated 5 months ago
- ☆47Updated 4 months ago
- ☆28Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆24Updated 3 weeks ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆33Updated 2 months ago
- ☆15Updated 2 years ago
- R package for analysing single cell data☆48Updated last year
- ☆37Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆42Updated 8 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆38Updated 4 months ago