cboix / admultiregion_analysis
Code repository for single-cell atlas of Alzheimer's disease progression across brain regions
☆32Updated last year
Alternatives and similar repositories for admultiregion_analysis
Users that are interested in admultiregion_analysis are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week
- ☆40Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆58Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 7 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆22Updated 3 weeks ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- The scripts used for analyzing JAX mouse dataset☆25Updated 6 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 7 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆78Updated last year
- scWGCNA☆60Updated 2 years ago
- ☆18Updated 3 weeks ago
- ☆31Updated 3 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated 2 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆16Updated 10 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago