Alternatives and similar repositories for admultiregion_analysis

Users that are interested in admultiregion_analysis are comparing it to the libraries listed below

• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆68Updated 8 months ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 7 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆59Updated 3 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆33Updated 2 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated 10 months ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆30Updated 2 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated last week
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 3 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆83Updated last month
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆85Updated last week
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆62Updated 8 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆27Updated 2 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆45Updated last year
• cbib / Seurat-Integrate
  R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)
  ☆27Updated last month
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 9 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆35Updated 5 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated 2 years ago
• neurorestore / DE-analysis
  ☆39Updated 3 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆79Updated 6 months ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆54Updated 2 months ago
• campbio / decontX
  Methods for decontamination of single cell data
  ☆47Updated 4 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆84Updated last month