Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This repository includes the raw data and core R script that will replicate Figures 1E, 1G, 1H, and Supplementary Figure 1D. To replicate the analysis, place the R script in R Studio and load the data into the Glob…
☆15Nov 30, 2020Updated 5 years ago
Alternatives and similar repositories for MultimodalMappingPDA-scRNASeq
Users that are interested in MultimodalMappingPDA-scRNASeq are comparing it to the libraries listed below
Sorting:
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- ☆21Dec 23, 2024Updated last year
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- single cell RNA-seq analysis template based on online resources☆11Jul 1, 2018Updated 7 years ago
- ☆13Apr 27, 2022Updated 3 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- ☆14Mar 17, 2022Updated 3 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆17Mar 2, 2022Updated 4 years ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 3 years ago
- AD regulome analysis☆14Apr 4, 2023Updated 2 years ago
- ☆19Dec 15, 2023Updated 2 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- ☆67Jun 7, 2023Updated 2 years ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Oct 12, 2018Updated 7 years ago
- ☆24Jun 6, 2025Updated 8 months ago
- ☆28Jan 25, 2022Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated 10 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆35Jan 8, 2025Updated last year
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆13Nov 24, 2025Updated 3 months ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- Code Editor, based on Code-OSS☆23Updated this week
- my profile☆14Jan 9, 2023Updated 3 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Jan 14, 2024Updated 2 years ago
- A rewrite of Robase 1.0.x using Promise API.☆11May 28, 2023Updated 2 years ago
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- ☆11Sep 19, 2022Updated 3 years ago
- This command line app scrapes Billboard charts, collects lyrics for those songs, and associated metadata from Spotify.☆11Sep 30, 2018Updated 7 years ago
- Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci☆14Dec 19, 2024Updated last year
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Proyecto Dinamics News - MisionTIC Ciclo 4 Grupo 7☆10Dec 21, 2021Updated 4 years ago
- Configuration files for kayobe. Mirror of code maintained at opendev.org.☆10Feb 23, 2026Updated last week
- Just a simple bot which fills out the survey on surveymonkey.com and submits it. The bot was made for a friend. Built with Node.js and Go…☆16Mar 5, 2023Updated 3 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 6 months ago
- ☆11Feb 25, 2020Updated 6 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- data processing code for MIMIC-IV 2.2☆14Jan 26, 2024Updated 2 years ago
- Official source code for Time is Not Enough: Time-Frequency based Explanation for Time-Series Black-Box Models☆12Dec 5, 2024Updated last year
- ☆11May 25, 2025Updated 9 months ago