Alternatives and similar repositories for MultimodalMappingPDA-scRNASeq

Users that are interested in MultimodalMappingPDA-scRNASeq are comparing it to the libraries listed below

• gabrielakinker / CCLE_heterogeneity
  ☆63Updated 2 years ago
• bei-lab / scRNA-AHCA
  Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
  ☆39Updated 2 years ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆28Updated 5 years ago
• Roy-lab / scMTNI
  ☆32Updated 6 months ago
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆43Updated last year
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆34Updated 4 years ago
• Svvord / iMAP
  A novel unsupervised batch removal framework, called iMAP, based on neural networks.
  ☆35Updated 4 years ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆56Updated 5 years ago
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated last year
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆70Updated last year
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆58Updated 2 years ago
• lanagarmire / Asgard
  ☆45Updated 2 years ago
• chensujun / scRNA
  ☆33Updated 4 years ago
• cartal / HCA_Heart
  This is the official repository for the Human Cell Atlas Heart project.
  ☆32Updated 5 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated last year
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• datapplab / AutoClass
  ☆43Updated 3 years ago
• BIMSBbioinfo / ikarus
  Identifying tumor cells at the single-cell level using machine learning
  ☆49Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 7 months ago
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆31Updated 5 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆54Updated 3 weeks ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆58Updated 8 months ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆35Updated 4 years ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆91Updated last month
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆100Updated last year
• theislab / AutoGeneS
  ☆61Updated 4 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆68Updated last year
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆62Updated 4 years ago