This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
☆19Sep 24, 2024Updated last year
Alternatives and similar repositories for BrainCellAtlas-reproducibility
Users that are interested in BrainCellAtlas-reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- ☆17Sep 13, 2023Updated 2 years ago
- Spatial transcriptomics of heart tissue☆28Jun 16, 2022Updated 3 years ago
- Methods to discover gene programs on single-cell data☆182Apr 1, 2026Updated last month
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆21May 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Integration of gut cell atlases☆35Oct 29, 2025Updated 6 months ago
- These are scripts for pan-cacner NK cells analyses.☆77Aug 18, 2023Updated 2 years ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated 7 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- ☆14Jan 24, 2024Updated 2 years ago
- CellPolaris☆14Jan 11, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Integrative Analyses across 388 human brain samples at single-cell resolution☆18Mar 21, 2024Updated 2 years ago
- ☆58Feb 23, 2024Updated 2 years ago
- Quantifying metabolism activity at the single-cell resolution☆173Feb 18, 2026Updated 2 months ago
- ☆21Sep 8, 2023Updated 2 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- ☆58Aug 8, 2024Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 9 months ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is the official repository for the Human Cell Atlas Heart project.☆32Jul 28, 2020Updated 5 years ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆15Oct 23, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- ☆18Feb 18, 2021Updated 5 years ago
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 4 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- ☆13Jun 6, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆28Jun 5, 2018Updated 7 years ago
- A R package for advanced single cell data viz☆74Aug 29, 2025Updated 8 months ago
- Assembly and Annotation of the Human Immune Health Atlas☆24Aug 28, 2025Updated 8 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆72Oct 16, 2025Updated 6 months ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- Exploring intrinsic gradients of the AHBA☆16Jan 23, 2025Updated last year
- ☆51Feb 16, 2022Updated 4 years ago