rnacentre / BrainCellAtlas-reproducibilityLinks
This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
☆20Updated last year
Alternatives and similar repositories for BrainCellAtlas-reproducibility
Users that are interested in BrainCellAtlas-reproducibility are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆24Updated 2 weeks ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- ☆40Updated 2 years ago
- ☆41Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆29Updated 3 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆20Updated last year
- ☆61Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆52Updated last year
- ☆57Updated last year
- ☆24Updated 2 years ago
- UHCA☆11Updated 10 months ago
- ☆48Updated last month
- ☆29Updated last week
- Cell-type Relationship Analysis Workflow Done Across Distances☆37Updated 2 weeks ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆17Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- Computational pipeline to process EasySci-RNA data.☆22Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 3 weeks ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆13Updated 2 years ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆33Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆54Updated last week
- ☆22Updated 2 years ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆23Updated last year
- ☆17Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆37Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year