rnacentre / BrainCellAtlas-reproducibility
This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
☆15Updated last month
Related projects ⓘ
Alternatives and complementary repositories for BrainCellAtlas-reproducibility
- Code to reproduce analyses and figures for Kamath et al., 2022☆10Updated 2 years ago
- ☆37Updated 10 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆14Updated 8 months ago
- ☆14Updated last year
- ☆13Updated last year
- Scripts from the GBM cellular states paper☆18Updated 3 years ago
- ☆16Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- ☆23Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- iterative clustering pipeline of big single cell datasets.☆26Updated last week
- Deconvolution of spatial transcriptomics at single-cell resolution☆14Updated 2 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- ☆14Updated 11 months ago
- A tissue-specific single-cell biological age model☆9Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆18Updated 8 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- ☆16Updated 8 months ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆12Updated 9 months ago
- Spatial transcriptomics of heart tissue☆17Updated 2 years ago
- R tools for analysis and visualization of single-cell subclustering data☆12Updated 6 months ago
- ☆17Updated 2 years ago
- ☆15Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- ☆17Updated 3 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆18Updated 2 years ago
- Code used to process the data of the HBCA project☆21Updated 9 months ago
- UHCA☆11Updated 3 years ago