Alternatives and similar repositories for BrainCellAtlas-reproducibility:

Users that are interested in BrainCellAtlas-reproducibility are comparing it to the libraries listed below

• ListerLab / pfc_development
  ☆16Updated 2 years ago
• Ginnay / DcjComm
  Cell clustering and communication network inference for single-cell transcriptomics
  ☆13Updated 7 months ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆46Updated last year
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆29Updated 2 months ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆20Updated 3 years ago
• AllenInstitute / mouse_aging_scRNAseq
  analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain
  ☆16Updated 10 months ago
• tkamath1 / Kamathetal2022
  Code to reproduce analyses and figures for Kamath et al., 2022
  ☆10Updated 2 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆27Updated last year
• LieberInstitute / 10xPilot_snRNAseq-human
  10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
  ☆22Updated 2 years ago
• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆11Updated last year
• ventolab / UHCA-Uterine-Human-Cell-Altas
  UHCA
  ☆11Updated 2 months ago
• yunshun / HumanBreast10X
  ☆25Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆24Updated 3 years ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆31Updated last year
• tallulandrews / LiverMap2.0
  ☆14Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated this week
• walsh-quail-labs / IMC_Brain
  ☆18Updated last year
• LieberInstitute / VistoSeg
  Image processing pipeline for spatial projects
  ☆15Updated last year
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆17Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆17Updated last week
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆24Updated 2 years ago
• cboix / admultiregion_analysis
  Code repository for single-cell atlas of Alzheimer's disease progression across brain regions
  ☆32Updated 11 months ago
• saeyslab / brainimmuneatlas
  Overview of the scripts used to analyse the brainimmuneatlas data
  ☆19Updated 4 years ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated last year
• kaifuchenlab / MEBOCOST
  ☆16Updated 10 months ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• ventolab / HECA-Human-Endometrial-Cell-Atlas
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆24Updated 9 months ago