Lecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.
☆82Dec 4, 2025Updated 3 months ago
Alternatives and similar repositories for intro_python
Users that are interested in intro_python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆30Mar 9, 2026Updated 2 weeks ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated 9 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆30Mar 19, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 5 years ago
- Post-verkko graph and assembly curation in Python.☆18Feb 11, 2026Updated last month
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- Pairwise whole genome aligner☆233Mar 2, 2026Updated 3 weeks ago
- ☆20Nov 30, 2023Updated 2 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Nov 15, 2017Updated 8 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆15Jan 3, 2026Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 5 months ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- GitHub for the SIB courses NGS - Genome variant analysis☆27Jan 15, 2026Updated 2 months ago
- Description Materials for Spring 2020 Applied Genomics Course☆16Apr 22, 2020Updated 5 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Yet another Hi-C scaffolding tool☆175Nov 4, 2024Updated last year
- Sketch phylogenetic trees and networks☆24Feb 5, 2026Updated last month
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆136Feb 22, 2026Updated last month
- Repository with NGSchool2022 materials☆14Sep 19, 2022Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Tool for fully-automated inference of species trees from raw genome assemblies☆44Feb 15, 2026Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123Feb 24, 2026Updated last month
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆78Apr 30, 2021Updated 4 years ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year