benedictpaten / intro_pythonLinks
Lecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.
☆82Updated this week
Alternatives and similar repositories for intro_python
Users that are interested in intro_python are comparing it to the libraries listed below
Sorting:
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆38Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆35Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- ☆10Updated 5 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 4 months ago
- Population Genomics in R workshop☆12Updated last year
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 5 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- ☆44Updated 7 months ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆44Updated this week
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python…☆16Updated 6 months ago
- Workshop on Genomics - Genomics Adventure☆42Updated 4 months ago
- A pipeline creation tool using Snakemake☆11Updated last week
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Open source tools and papers for structural variant analysis.☆11Updated 6 years ago
- ☆19Updated last year
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- genotype dimensionality reduction with a VAE☆46Updated 7 months ago
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆63Updated 11 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- microhaplotype visualizer and analyzer☆20Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago