iqbal-lab-org / BIGSIView external linksLinks
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
☆10Jun 13, 2023Updated 2 years ago
Alternatives and similar repositories for BIGSI
Users that are interested in BIGSI are comparing it to the libraries listed below
Sorting:
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 6 months ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- a simple tool for listing conda environments with descriptions☆14Mar 28, 2025Updated 10 months ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Jan 14, 2022Updated 4 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆149Oct 2, 2025Updated 4 months ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- sfasta☆35Apr 30, 2025Updated 9 months ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆72Jul 31, 2025Updated 6 months ago
- ☆20Feb 13, 2016Updated 10 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated last year
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆23Nov 24, 2025Updated 2 months ago
- A Whole Genome Alignment Visualization Tool for the Web☆44Apr 29, 2023Updated 2 years ago
- Antimicrobial Resistance Identification By Assembly☆184Oct 12, 2023Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 2 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated 9 months ago
- ☆20Sep 4, 2024Updated last year
- Application and Python module for average nucleotide identity analyses of microbes.☆217Jul 1, 2025Updated 7 months ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Dec 5, 2025Updated 2 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 4 months ago
- Pathogen NGS Documentary☆154Jan 26, 2026Updated 3 weeks ago
- A microbial profiling framework for metagenomic analysis☆24Apr 9, 2020Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆186Feb 6, 2026Updated last week
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Feb 6, 2025Updated last year
- Gene cluster comparison figure generator☆635Dec 22, 2025Updated last month
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 7 months ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Jun 10, 2020Updated 5 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆75Updated this week