iqbal-lab-org / BIGSILinks
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
☆10Updated last year
Alternatives and similar repositories for BIGSI
Users that are interested in BIGSI are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆29Updated 2 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 2 months ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- transposable element typing pipeline☆18Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- Repository for codes, analyses and visualizations for the CAMI II challenges☆12Updated last year
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- ☆20Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- ORF prediction using python☆11Updated 3 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- ☆13Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆15Updated 2 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- strain-level analysis tools☆37Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago