Pangenome file formats based on SQLite
☆16Jul 19, 2026Updated this week
Alternatives and similar repositories for gbz-base
Users that are interested in gbz-base are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆35Jul 2, 2026Updated 2 weeks ago
- ☆22Jul 13, 2026Updated last week
- ☆23Jul 8, 2026Updated last week
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆18May 23, 2026Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆24Feb 16, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Phased structural variant discovery in pangenomes☆43Apr 20, 2026Updated 3 months ago
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- Multiple sequence alignment of long tandem repeats☆30Jun 23, 2026Updated 3 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Fast and Optimal Affine-Gap Sequence-to-Graph Alignment☆28Updated this week
- General purpose utility related to GAF files☆31May 20, 2026Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- A graph aligner☆31Sep 17, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆42Oct 6, 2025Updated 9 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆136Updated this week
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Eukaryote Genome Annotation☆18Jul 10, 2026Updated last week
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆16Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated 3 weeks ago
- ☆20Jun 30, 2026Updated 3 weeks ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆39Feb 22, 2023Updated 3 years ago
- Misassembly Identifier☆25Jun 2, 2026Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 6 months ago
- Targeted genotyper for complex polymorphic genes☆43Jul 7, 2026Updated 2 weeks ago
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month