Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment
☆18May 23, 2026Updated last month
Alternatives and similar repositories for minipoa
Users that are interested in minipoa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Optimal Affine-Gap Sequence-to-Graph Alignment☆28Updated this week
- Pangenome file formats based on SQLite☆16Updated this week
- Error correction of long reads☆16Jan 30, 2026Updated 5 months ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆42Oct 6, 2025Updated 9 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆42Jul 10, 2026Updated last week
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆18May 23, 2026Updated last month
- ☆20Jun 30, 2026Updated 3 weeks ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated last month
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Parallel Lightweight Suffix Array Algorithm.☆19Dec 28, 2016Updated 9 years ago
- ☆23Jul 8, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆35Jul 2, 2026Updated 2 weeks ago
- ☆129Updated this week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆142Jun 26, 2026Updated 3 weeks ago
- General purpose utility related to GAF files☆31May 20, 2026Updated 2 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆107Updated this week
- Pangenome-based structural variation caller☆28Jan 20, 2026Updated 6 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆220Jun 21, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A graph aligner☆31Sep 17, 2024Updated last year
- ☆17Dec 7, 2022Updated 3 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Jun 18, 2026Updated last month
- adaptive genome assembly using nanopore sequencing☆27Feb 5, 2026Updated 5 months ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 6 months ago
- Pairwise whole genome aligner☆243Updated this week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆82Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last week
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆20Jun 23, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 4 months ago
- Fast approximate string searching☆158Jul 13, 2026Updated last week
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- Pangenome Mutation-Annotated Networks☆45Jul 14, 2026Updated last week
- ☆67Apr 9, 2024Updated 2 years ago
- Efficient construction of the BWT using string compression☆22May 26, 2026Updated last month