quinlan-lab / vcftidy
normalize, left-align, trim, validate and clean VCF files
☆20Updated 9 years ago
Alternatives and similar repositories for vcftidy:
Users that are interested in vcftidy are comparing it to the libraries listed below
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- EXPERIMENTAL implementation of side graph☆10Updated 10 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Simple matching of HTS samples based on HLA typing☆13Updated 8 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- ☆37Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- Lacer: Accurate Base Quality Score Recalibration using Linear Algebra☆8Updated 3 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- ☆28Updated 3 weeks ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆38Updated last year