quinlan-lab / vcftidyLinks
normalize, left-align, trim, validate and clean VCF files
☆20Updated 10 years ago
Alternatives and similar repositories for vcftidy
Users that are interested in vcftidy are comparing it to the libraries listed below
Sorting:
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- EXPERIMENTAL implementation of side graph☆10Updated 10 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- ☆37Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- ☆13Updated 8 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Integrated Variant Caller☆17Updated 7 years ago