Python-interface C++ library for Bayesian phylogenetics via optimization
☆41Apr 8, 2024Updated 2 years ago
Alternatives and similar repositories for bito
Users that are interested in bito are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Apr 21, 2026Updated last week
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- ☆10Dec 20, 2022Updated 3 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated last week
- Developing efficient Bayesian phylogenetic inference methods☆11Dec 21, 2019Updated 6 years ago
- Code for learnable topological features for phylogenetic inference via graph neural networks☆10Mar 3, 2023Updated 3 years ago
- Tutorial on Bayesian phylogenetic analysis☆52Sep 21, 2017Updated 8 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 11 months ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Jul 28, 2019Updated 6 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Apr 15, 2026Updated 2 weeks ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆15Jun 21, 2024Updated last year
- ☆15Aug 6, 2020Updated 5 years ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆144Updated this week
- ☆20Jun 15, 2024Updated last year
- Bio++ Program Suite☆18Feb 3, 2026Updated 3 months ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆63Mar 15, 2026Updated last month
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 8 months ago
- Population-scale Ancestral Recombination Graph (ARG) library☆183Updated this week
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Lightweight header-only C++ library for loading and traversing trees☆24Mar 9, 2025Updated last year
- Sequence analysis library used by Eddy/Rivas lab code☆53Feb 16, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Mar 12, 2026Updated last month
- Probabilistic Programming: A Powerful New Approach to Statistical Phylogenetics☆9Jan 15, 2022Updated 4 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 12 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 8 months ago
- Quality control for phylogenetic analyses☆13Apr 27, 2026Updated last week
- Python library to simulate evolutionary sequence data☆80Dec 16, 2021Updated 4 years ago