phylovi / bito
Python-interface C++ library for Bayesian phylogenetics via optimization
☆38Updated 11 months ago
Alternatives and similar repositories for bito:
Users that are interested in bito are comparing it to the libraries listed below
- Phylogenetic inference using Stan☆24Updated 2 weeks ago
- ☆13Updated 4 months ago
- Calculate distances between phylogenetic trees in R☆32Updated last month
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆54Updated 9 years ago
- Software for linkage disequilibrium graphical models☆15Updated last year
- [mu]tation [s]pectrum [h]istory [i]nference☆25Updated 2 months ago
- K-mer Counting for Biological Sequence Analysis☆27Updated 5 years ago
- Multinomial Logistic-Normal Models (really fast)☆20Updated 3 weeks ago
- genotype dimensionality reduction with a VAE☆44Updated 2 weeks ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 4 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Updated 2 years ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆19Updated last year
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Implementation of the treeSeg algorithm as an R package.☆14Updated 2 years ago
- Quantitative Trait Cluster Association Test in R☆25Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated last week
- ☆20Updated 2 months ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Updated last year
- Phylogenetic Likelihood Library☆28Updated 4 years ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- Tools for describing and manipulating demographic models.☆19Updated 3 weeks ago
- ☆12Updated 5 years ago
- A probabilistic framework in PyTorch for phylogenetic models☆15Updated 3 months ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆13Updated 4 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 6 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- A book for my course☆17Updated 4 months ago
- GridLMM package☆39Updated last month