Python-interface C++ library for Bayesian phylogenetics via optimization
☆42Apr 8, 2024Updated 2 years ago
Alternatives and similar repositories for bito
Users that are interested in bito are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 4, 2026Updated 2 months ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 4 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Oct 24, 2026Updated last week
- Hamiltonian Monte Carlo on the space of phylogenies☆10Apr 20, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- ☆11Dec 20, 2022Updated 3 years ago
- Code for learnable topological features for phylogenetic inference via graph neural networks☆11Mar 3, 2023Updated 3 years ago
- Input files and scripts related to our study entitled "Epidemiological hypothesis testing using a phylogeographic and phylodynamic framew…☆13Oct 27, 2024Updated 2 years ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated 6 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆67Sep 9, 2026Updated last month
- Tutorial on Bayesian phylogenetic analysis☆54Sep 21, 2017Updated 9 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees☆13Mar 26, 2019Updated 7 years ago
- ☆12Oct 2, 2026Updated last month
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 9 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- ☆10May 5, 2023Updated 3 years ago
- BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models☆11Apr 30, 2025Updated last year
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 3 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆46Jul 28, 2019Updated 7 years ago
- ☆19Jul 21, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Connecting research programs and the outside world☆33Updated this week
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Phylogenetic Likelihood Library 2 - experimental☆12May 12, 2025Updated last year
- Sequence analysis library used by Eddy/Rivas lab code☆58Oct 24, 2026Updated last week
- Population-scale Ancestral Recombination Graph (ARG) library☆192Oct 23, 2026Updated last week
- rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.☆13Jan 2, 2024Updated 2 years ago
- ☆15Aug 6, 2020Updated 6 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- general purpose library for evaluating the likelihood of sequence evolution on trees☆148Oct 21, 2026Updated last week
- ☆20Jun 15, 2024Updated 2 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆13Jun 23, 2025Updated last year
- Bio++ Program Suite☆18Oct 7, 2026Updated 3 weeks ago
- PhyDyn: Epidemiological modelling in BEAST☆21Sep 7, 2026Updated last month
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆17Jun 21, 2024Updated 2 years ago
- ☆68Oct 17, 2023Updated 3 years ago