Alternatives and similar repositories for RWTY:

Users that are interested in RWTY are comparing it to the libraries listed below

• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 11 months ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 2 weeks ago
• emvolz-phylodynamics / treestructure
  ☆17Updated 3 weeks ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆46Updated 7 years ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆61Updated last year
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• katholt / plotTree
  ☆67Updated 8 years ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last month
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆57Updated 6 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆90Updated last year
• vmaffei / dada2_to_picrust
  Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)
  ☆19Updated 6 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 5 months ago
• phylogeography / SPREADv1
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
  ☆20Updated 6 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆47Updated 11 months ago
• BDI-pathogens / phyloscanner
  Phylogenetics between and within hosts at once, all along the genome.
  ☆48Updated 5 months ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 6 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• larssnip / micropan
  R package for microbial pangenomics
  ☆23Updated 2 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆18Updated 5 months ago
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated 4 months ago
• hmorlon / PANDA
  Phylogenetic ANalyses of DiversificAtion
  ☆24Updated 2 months ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• phylogeography / SpreaD3
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
  ☆15Updated last year
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• hsgweon / pipits
  Automated pipeline for analyses of fungal ITS from the Illumina
  ☆31Updated 7 months ago