danlwarren / RWTY
R We There Yet?
☆30Updated last month
Alternatives and similar repositories for RWTY:
Users that are interested in RWTY are comparing it to the libraries listed below
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Reconstruction of transmission trees using genomic data☆62Updated last year
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- ☆17Updated 3 weeks ago
- ☆67Updated 8 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- ☆19Updated 10 months ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Population and Evolutionary Genetics Analysis System☆28Updated 2 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆57Updated 7 years ago
- Genome wide orthology inference and dNdS estimation☆90Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆15Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Clustering phylogenetic trees with python☆25Updated 8 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- ☆26Updated 4 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated this week
- Python version of PHLAWD☆21Updated 6 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- DPPDIV☆12Updated 5 years ago