ms609 / QuartetLinks
R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
☆16Updated last month
Alternatives and similar repositories for Quartet
Users that are interested in Quartet are comparing it to the libraries listed below
Sorting:
- Python version of PHLAWD☆21Updated last year
- Phylogenetic tools for Eco-phylogenetics☆13Updated last year
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated last month
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 8 months ago
- Phylogenetic penalized likelihood☆54Updated 6 months ago
- A program for multimodel inference on speciation and trait evolution☆35Updated 8 years ago
- spruceup☆25Updated 4 months ago
- Scalable relaxed clock phylogenetic dating☆27Updated 4 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆44Updated last year
- Calculate distances between phylogenetic trees in R☆35Updated this week
- ☆16Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Updated 2 months ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Updated 3 years ago
- ☆24Updated 8 months ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆43Updated 5 months ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆21Updated 5 months ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Updated last year
- ☆22Updated 11 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆15Updated last year
- ☆43Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated last week
- Reconstruct Ancestral State in Phylogenies☆26Updated last year
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Updated 3 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆20Updated 2 years ago
- ☆21Updated last week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Updated last year
- ☆19Updated last year
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Updated 2 years ago
- Phylogenetic ANalyses of DiversificAtion☆26Updated this week