YuLab-SMU / treedataverse
Meta package for processing and visualizing tree with data
☆27Updated 3 years ago
Alternatives and similar repositories for treedataverse:
Users that are interested in treedataverse are comparing it to the libraries listed below
- Scalable relaxed clock phylogenetic dating☆24Updated 11 months ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆28Updated 2 weeks ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- ☆10Updated 4 years ago
- the hierfstat package☆25Updated 4 months ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated 7 months ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- initial commit☆26Updated 2 years ago
- Analysis of Phylogenetics and Evolution☆64Updated last week
- ☆19Updated 9 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- A smorgasbord of R functions for population genomic analyses☆18Updated 2 weeks ago
- Python version of PHLAWD☆21Updated 4 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- ☆30Updated 2 weeks ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆68Updated 10 months ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 4 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- ☆26Updated last year
- functions for analyzing phyloseq data☆26Updated last month
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated 4 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year