aquaskyline / LRSIM
10x Genomics Reads Simulator
☆45Updated last year
Alternatives and similar repositories for LRSIM:
Users that are interested in LRSIM are comparing it to the libraries listed below
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Structural Variant Index☆70Updated last month
- UCSC Nanopore☆43Updated 5 years ago
- ☆79Updated 8 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆102Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Tools for analyzing 10X Genomics data☆42Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- ☆47Updated 4 years ago
- ☆39Updated 8 months ago
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Human reference genome analysis sets☆50Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- ☆46Updated 2 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆21Updated 2 weeks ago