Assembly based core genome SNP alignments for bacteria
☆25Oct 23, 2019Updated 7 years ago
Alternatives and similar repositories for ekidna
Users that are interested in ekidna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆28Sep 7, 2019Updated 7 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 8 years ago
- Get microbial sequence data easier and faster☆29Nov 7, 2019Updated 6 years ago
- A tool for managing your pores☆10Jul 22, 2026Updated 3 months ago
- Generate mutated sequence files from a reference genome.☆11Oct 14, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automatically calculate phylogenetic trees from bacterial core genes☆21May 28, 2026Updated 5 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆157Dec 31, 2025Updated 10 months ago
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 7 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Nextflow version of SNVPhyl☆12Oct 24, 2024Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆159Sep 2, 2026Updated 2 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 9 months ago
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Dec 9, 2024Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Micro 612 genomics workshop☆38Apr 23, 2021Updated 5 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆69Oct 23, 2026Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- CRyPTIC data processing pipelines☆36Jul 18, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Making whole bacterial genome sequencing data analysis easy☆116Apr 22, 2025Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆11Jul 5, 2024Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- ☆16Jan 21, 2024Updated 2 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- ☆11Feb 16, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆80Dec 5, 2023Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆32Dec 14, 2023Updated 2 years ago
- simple and not slow ORF caller☆24Apr 7, 2026Updated 6 months ago