A R tool to parse and visualize chloroplast genomes
☆12Dec 1, 2021Updated 4 years ago
Alternatives and similar repositories for Chloroplot
Users that are interested in Chloroplot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- chloroplast genome assembly using long reads data☆17Jul 8, 2025Updated 10 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- ☆16Oct 9, 2024Updated last year
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆12Feb 10, 2023Updated 3 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Draw the Gene structure based on the GFF and gene's ID☆10Jun 13, 2020Updated 5 years ago
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆13May 8, 2026Updated 3 weeks ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- A pipeline for assemble chroloplast genome using short/long reads☆10Mar 31, 2022Updated 4 years ago
- Assembly chloroplast genome and validate conformation☆15May 21, 2024Updated 2 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 6 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆16Jul 7, 2025Updated 10 months ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆55Mar 7, 2025Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated last year
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆37Apr 13, 2024Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- Just the leafviz parts of Leafcutter☆15Apr 2, 2026Updated last month
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Posterior summarisation in Bayesian phylogenetics☆73Sep 27, 2025Updated 8 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 8 months ago
- ☆13Aug 13, 2024Updated last year
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆36Apr 7, 2026Updated last month
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated last year
- Graph-based Sequence Assembly Toolkit☆23May 7, 2026Updated 3 weeks ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 7 months ago
- Curso de introducción a la bioinformática e investigación reproducible☆33Jan 2, 2026Updated 4 months ago
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BuscoPhylo : Easy Busco-based phylogenomic analysis tool☆11Jul 3, 2025Updated 10 months ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 2 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Jul 30, 2019Updated 6 years ago
- Identifying transcription factor binding sites from neural network contribution scores☆18Nov 8, 2025Updated 6 months ago
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 2 years ago