LeanQ / SPLITREADERLinks
Split-read pipeline for the identification of non-reference TE insertions with TSDs
☆25Updated 4 years ago
Alternatives and similar repositories for SPLITREADER
Users that are interested in SPLITREADER are comparing it to the libraries listed below
Sorting:
- Transposable element polymorphism identification☆33Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆42Updated last year
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆35Updated last year
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- conserved non-coding sequence☆14Updated 3 years ago
- ☆31Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Structural variant merging tool☆53Updated 11 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- ☆22Updated 6 years ago
- ☆16Updated 9 months ago
- Variant annotation and merging pipeline☆39Updated 2 weeks ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated 2 weeks ago
- toolkit to process gtf files☆17Updated 3 years ago
- ☆31Updated 11 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- ☆15Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago