LeanQ / SPLITREADERLinks
Split-read pipeline for the identification of non-reference TE insertions with TSDs
☆25Updated 5 years ago
Alternatives and similar repositories for SPLITREADER
Users that are interested in SPLITREADER are comparing it to the libraries listed below
Sorting:
- Transposable element polymorphism identification☆34Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆31Updated 6 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆32Updated last year
- ☆44Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- ☆16Updated 6 years ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆36Updated last year
- Structural variant merging tool☆57Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 8 months ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 5 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- toolkit to process gtf files☆17Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆22Updated 6 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago