LeanQ / SPLITREADERLinks
Split-read pipeline for the identification of non-reference TE insertions with TSDs
☆25Updated 5 years ago
Alternatives and similar repositories for SPLITREADER
Users that are interested in SPLITREADER are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- ☆31Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- ☆31Updated last year
- ☆42Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- ☆36Updated last year
- Upscaling SV detection to a multi-population level.☆22Updated last month
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- Haplotype and population structure inference using neural networks.☆27Updated 9 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- ☆15Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated last month
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- ☆51Updated 6 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Structural variant merging tool☆54Updated last year