LeanQ / SPLITREADER
Split-read pipeline for the identification of non-reference TE insertions with TSDs
☆24Updated 4 years ago
Alternatives and similar repositories for SPLITREADER:
Users that are interested in SPLITREADER are comparing it to the libraries listed below
- Transposable element polymorphism identification☆32Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆31Updated 5 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- ☆16Updated 3 months ago
- ☆42Updated 8 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- ☆16Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- A repo contains historical and updated MTEC libraries.☆17Updated 4 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Updated last month
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- ☆27Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Yet another Hi-C scaffolding tool☆18Updated 2 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Variant annotation and merging pipeline☆31Updated last week
- Haplotype and population structure inference using neural networks.☆27Updated last month
- A pipeline for isoseq☆23Updated 6 years ago