LeanQ / SPLITREADERLinks
Split-read pipeline for the identification of non-reference TE insertions with TSDs
☆25Updated 5 years ago
Alternatives and similar repositories for SPLITREADER
Users that are interested in SPLITREADER are comparing it to the libraries listed below
Sorting:
- Transposable element polymorphism identification☆34Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- ☆42Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆24Updated 2 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- ☆31Updated 5 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- ☆16Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆37Updated last year
- Upscaling SV detection to a multi-population level.☆22Updated 2 months ago
- SV genotyping with long reads☆39Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Structural variant merging tool☆55Updated last year
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago