LeanQ / SPLITREADER
Split-read pipeline for the identification of non-reference TE insertions with TSDs
☆24Updated 4 years ago
Alternatives and similar repositories for SPLITREADER:
Users that are interested in SPLITREADER are comparing it to the libraries listed below
- Transposable element polymorphism identification☆33Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Scripts for NGS processing☆17Updated 7 years ago
- ☆30Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆16Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 4 years ago
- ☆16Updated 4 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Upscaling SV detection to a multi-population level.☆21Updated 4 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- A long-read SV calling pipeline☆11Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆11Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- conserved non-coding sequence☆14Updated 2 years ago
- ☆42Updated 9 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 2 months ago
- Computational Analysis of Gene Expression Evolution☆36Updated 3 weeks ago
- ☆10Updated 10 years ago